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seqLogo
•
reset
1
vote
4
replies
1.1k
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
seqLogo
DiffLogo
2.2 years ago
zhxiaokang
▴ 20
0
votes
1
reply
1.4k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 8.0 years ago by
Marcel Ramos
700 • written 8.0 years ago by
clausdkuhn
• 0
0
votes
5
replies
1.8k
views
Plotting protein position weighted matrices in seqLogo and DiffLogo
seqlogo
DiffLogo
updated 8.3 years ago by
mgledi
• 0 • written 8.3 years ago by
jeffb
• 0
0
votes
0
replies
882
views
Change chars ACGT to ACGU in seqLogo
seqLogo
seqLogo
10.9 years ago
Fabrice Tourre
▴ 970
0
votes
0
replies
919
views
cosmo for particular sequences
seqLogo
seqLogo
12.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
seqLogo package: sequence logo graph with background frequency?
seqLogo
seqLogo
12.9 years ago
Tim Smith
★ 1.1k
3
votes
3
replies
2.7k
views
Drawing multiple sequence logos with seqLogo?
graph
seqLogo
graph
seqLogo
14.2 years ago
Nenad Bartonicek
▴ 80
7 results • Page
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
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