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scuttle

updated 11 weeks ago by Aaron Lun ★ 28k • written 11 weeks ago by Adam ▴ 10

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scran bluster scater scuttle

updated 11 months ago by ATpoint ★ 4.7k • written 11 months ago by Dario Strbenac ★ 1.6k

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scuttle scater

updated 18 months ago by ATpoint ★ 4.7k • written 18 months ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

2.1 years ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 2.1 years ago by alan.ocallaghan ▴ 160 • written 2.1 years ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

3.0 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

3.3 years ago enricoferrero ▴ 680

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scran SingleCellExperiment scuttle scater

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by enricoferrero ▴ 680

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scran scater scuttle

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.6 years ago by enricoferrero ▴ 680

9 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k