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scuttle

updated 4 months ago by Aaron Lun ★ 28k • written 4 months ago by Adam ▴ 10

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scran bluster scater scuttle

updated 12 months ago by ATpoint ★ 4.8k • written 12 months ago by Dario Strbenac ★ 1.6k

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scuttle scater

updated 19 months ago by ATpoint ★ 4.8k • written 19 months ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

2.2 years ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 2.2 years ago by alan.ocallaghan ▴ 160 • written 2.3 years ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

3.1 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

3.5 years ago • updated 3.4 years ago enricoferrero ▴ 680

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scran SingleCellExperiment scuttle scater

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by enricoferrero ▴ 680

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scran scater scuttle

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by enricoferrero ▴ 680

9 results • Page 1 of 1

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Answer: WGCNA by ATpoint ★ 4.8k

> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …

Answer: cannot download atena annotation for human by Robert Castelo ★ 3.4k

Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…

Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Scholar to ATpoint ★ 4.8k