Bioconductor Sce

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6.0k

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sce SingleCellExperiment merge

updated 2.2 years ago by mollyab12 • 0 • written 3.0 years ago by achoppe ▴ 10

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2.4k

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SingleCellExperiment cluster identities sce

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by reinepapillon • 0

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2.0k

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singlecellexperiment sce scater

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by bharris • 0

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3.3k

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SingleCellExperiment scater sce quality control

updated 4.3 years ago by 1498554536 • 0 • written 5.1 years ago by Linda • 0

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2.3k

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sce markers single cell DE clusters

5.6 years ago ludmi.b • 0

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5.9k

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sce singlecellexperiment scRNAseq subsetting

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by TJ • 0

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1.2k

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scater sce biotype R

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by thebadpenny • 0

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1.3k

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sce biomart annotation

updated 7.8 years ago by Mike Smith ★ 6.6k • written 7.8 years ago by linda.c.dansereau • 0

8 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10