Bioconductor Sce

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5.1k

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sce SingleCellExperiment merge

updated 21 months ago by mollyab12 • 0 • written 2.6 years ago by achoppe ▴ 10

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2.2k

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SingleCellExperiment cluster identities sce

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by reinepapillon • 0

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1.6k

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singlecellexperiment sce scater

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by bharris • 0

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2.9k

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SingleCellExperiment scater sce quality control

updated 3.8 years ago by 1498554536 • 0 • written 4.7 years ago by Linda • 0

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1.8k

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sce markers single cell DE clusters

5.2 years ago ludmi.b • 0

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5.3k

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sce singlecellexperiment scRNAseq subsetting

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by TJ • 0

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1.1k

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scater sce biotype R

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by thebadpenny • 0

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1.2k

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sce biomart annotation

updated 7.4 years ago by Mike Smith ★ 6.6k • written 7.4 years ago by linda.c.dansereau • 0

8 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20