Showing : sc3 • reset
0
votes
3
replies
3.2k
views
Installing SC3: gfortran error on Mac M1
SC3
3.4 years ago krp • 0
1
vote
4
replies
1.9k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 670
0
votes
7
replies
2.7k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
5.7 years ago Bogdan ▴ 670
4
votes
5
replies
2.2k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.9 years ago by ▴ 150 • written 5.9 years ago by ▴ 60
0
votes
2
replies
1.2k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by • 0
0
votes
1
reply
1.6k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 6.2 years ago by ▴ 150 • written 6.3 years ago by • 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
1
vote
1
reply
1.6k
views
A question about log_transformed
SC3
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
votes
2
replies
1.2k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by • 0
1
vote
1
reply
1.1k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 7.0 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
0
votes
1
reply
1.5k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.1 years ago by ▴ 150 • written 7.2 years ago by • 0
1
vote
1
reply
1.8k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by ▴ 10
1
vote
8
replies
2.8k
views
SC3_estimate_k formatting error?
sc3 scater
updated 7.2 years ago by ▴ 150 • written 7.3 years ago by ▴ 10
5
votes
2
replies
6.9k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 10
4
votes
5
replies
2.2k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 20
1
vote
1
reply
1.7k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 20
0
votes
1
reply
3.8k
views
Import .mtx file in R
sc3
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by • 0
4
votes
2
replies
1.7k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by ▴ 20
3
votes
3
replies
1.6k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by ▴ 20
4
votes
3
replies
2.2k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ★ 1.5k
2
votes
5
replies
2.2k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ★ 1.5k
3
votes
2
replies
1.6k
views
SC3 tutorial error
SC3
updated 8.3 years ago by ▴ 150 • written 8.3 years ago by ▴ 30
3
votes
1
reply
1.6k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 8.3 years ago by ▴ 150 • written 8.3 years ago by ▴ 10
23 results • Page 1 of 1
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Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Comment: Gene Set Enrichment Analysis in Bioconductor course by info ▴ 10
If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…
Comment: cannot download atena annotation for human by Davide • 0
That's the error that comes up: > rmskann <- atena::annotaTEs(genome = "hg38", parsefun = "rmskbasicparser") Connecting to the Ann…
Votes
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
C: Vertical line at A=0, nothing else, on MA plot
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