Showing : sc3 • reset
0
votes
3
replies
3.1k
views
Installing SC3: gfortran error on Mac M1
SC3
3.2 years ago krp • 0
1
vote
4
replies
1.8k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ▴ 670
0
votes
7
replies
2.6k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
5.5 years ago Bogdan ▴ 670
4
votes
5
replies
2.1k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.7 years ago by ▴ 150 • written 5.7 years ago by ▴ 60
0
votes
2
replies
1.2k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.8 years ago by ▴ 150 • written 5.8 years ago by • 0
0
votes
1
reply
1.5k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 6.0 years ago by ▴ 150 • written 6.1 years ago by • 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.2 years ago by ▴ 150 • written 6.2 years ago by • 0
1
vote
1
reply
1.5k
views
A question about log_transformed
SC3
updated 6.5 years ago by 67k • written 6.5 years ago by • 0
0
votes
2
replies
1.1k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.6 years ago by ▴ 150 • written 6.6 years ago by • 0
1
vote
1
reply
1.0k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by ▴ 10
0
votes
1
reply
1.4k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by • 0
1
vote
1
reply
1.8k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 10
1
vote
8
replies
2.7k
views
SC3_estimate_k formatting error?
sc3 scater
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
5
votes
2
replies
6.7k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
4
votes
5
replies
2.1k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 20
1
vote
1
reply
1.6k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 7.3 years ago by ▴ 150 • written 7.4 years ago by ▴ 20
0
votes
1
reply
3.7k
views
Import .mtx file in R
sc3
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by • 0
4
votes
2
replies
1.6k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 20
3
votes
3
replies
1.6k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ▴ 20
4
votes
3
replies
2.1k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by ★ 1.5k
2
votes
5
replies
2.1k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ★ 1.5k
3
votes
2
replies
1.5k
views
SC3 tutorial error
SC3
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ▴ 30
3
votes
1
reply
1.5k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 8.1 years ago by ▴ 150 • written 8.2 years ago by ▴ 10
23 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
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