Showing : sc3 • reset
0
votes
3
replies
3.3k
views
Installing SC3: gfortran error on Mac M1
SC3
3.5 years ago krp • 0
1
vote
4
replies
2.0k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 670
0
votes
7
replies
2.8k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
5.8 years ago Bogdan ▴ 670
4
votes
5
replies
2.3k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by ▴ 60
0
votes
2
replies
1.2k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 6.1 years ago by ▴ 150 • written 6.1 years ago by • 0
0
votes
1
reply
1.6k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by • 0
1
vote
1
reply
1.7k
views
A question about log_transformed
SC3
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
2
replies
1.2k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by • 0
1
vote
1
reply
1.1k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 7.1 years ago by ▴ 150 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.5k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.2 years ago by ▴ 150 • written 7.3 years ago by • 0
1
vote
1
reply
1.9k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 10
1
vote
8
replies
2.9k
views
SC3_estimate_k formatting error?
sc3 scater
updated 7.3 years ago by ▴ 150 • written 7.4 years ago by ▴ 10
5
votes
2
replies
7.1k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 7.4 years ago by ▴ 150 • written 7.4 years ago by ▴ 10
4
votes
5
replies
2.3k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 20
1
vote
1
reply
1.7k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ▴ 20
0
votes
1
reply
3.8k
views
Import .mtx file in R
sc3
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by • 0
4
votes
2
replies
1.7k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by ▴ 20
3
votes
3
replies
1.6k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ▴ 20
4
votes
3
replies
2.2k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ★ 1.5k
2
votes
5
replies
2.2k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ★ 1.5k
3
votes
2
replies
1.6k
views
SC3 tutorial error
SC3
updated 8.4 years ago by ▴ 150 • written 8.4 years ago by ▴ 30
3
votes
1
reply
1.6k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 8.4 years ago by ▴ 150 • written 8.4 years ago by ▴ 10
23 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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