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list save dataframe

updated 2.5 years ago by shepherl 4.1k • written 2.5 years ago by orticello.1160797 ▴ 10

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SummarizedExperiment DESeqDataSet GenomicRanges DESeq2 save

updated 9.9 years ago by Wolfgang Huber ★ 13k • written 9.9 years ago by akaever ▴ 30

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

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scater/scran with TPMs from Salmon - counts?

Answer: enrichGOgradient color change

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