Bioconductor Sashimi

Showing : sashimi • reset

votes

replies

202

views

Coverage Gviz sashimi

4 months ago Marco • 0

votes

998

views

gviz sashimi

updated 5.4 years ago by Robert Ivanek ▴ 750 • written 5.4 years ago by willbradshaw • 0

votes

replies

1.5k

views

Gviz Sashimi

5.7 years ago benjamin.carter • 0

vote

replies

2.4k

views

Gviz sashimi sashimi plots read counting bam

updated 7.9 years ago by Robert Ivanek ▴ 750 • written 7.9 years ago by bernt.popp • 0

votes

1.3k

views

gviz intropolis junction sashimi

updated 8.4 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.4 years ago by bernt.popp • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Votes

Awards • All

Teacher to Axel Klenk ★ 1.1k