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sashimi
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Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
6 months ago
Marco
• 0
0
votes
1
reply
1.0k
views
Extracting read coverage data from a Gviz AlignmentsTrack
gviz
sashimi
updated 5.6 years ago by
Robert Ivanek
▴ 750 • written 5.6 years ago by
willbradshaw
• 0
0
votes
3
replies
1.5k
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Normalized sashimi plots with Gviz
Gviz
Sashimi
5.9 years ago
benjamin.carter
• 0
1
vote
4
replies
2.5k
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Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 8.1 years ago by
Robert Ivanek
▴ 750 • written 8.1 years ago by
bernt.popp
• 0
0
votes
1
reply
1.3k
views
GVIZ junction plot without bam
gviz
intropolis
junction
sashimi
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
bernt.popp
• 0
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Answer: Having Trouble Using CNE12() and CNE21() in CNEr
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1324087964
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![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
Comment: DiffBind can't find a DAR
by
ATpoint
★ 4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons
by
bd2000
▴ 30
Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
• 0
Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…
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Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Answer: SingleR with multiple single cell references
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