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sashimi
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258
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Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
6 months ago
Marco
• 0
0
votes
1
reply
1.0k
views
Extracting read coverage data from a Gviz AlignmentsTrack
gviz
sashimi
updated 5.6 years ago by
Robert Ivanek
▴ 750 • written 5.7 years ago by
willbradshaw
• 0
0
votes
3
replies
1.6k
views
Normalized sashimi plots with Gviz
Gviz
Sashimi
6.0 years ago
benjamin.carter
• 0
1
vote
4
replies
2.5k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 8.1 years ago by
Robert Ivanek
▴ 750 • written 8.1 years ago by
bernt.popp
• 0
0
votes
1
reply
1.3k
views
GVIZ junction plot without bam
gviz
intropolis
junction
sashimi
updated 8.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.7 years ago by
bernt.popp
• 0
5 results • Page
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Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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