Bioconductor Samtools

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samtools bcftools

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by mike_flower • 0

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samtools tabix VariantAnnotation VCFArray

updated 3.6 years ago by Vincent J. Carey, Jr. 6.7k • written 3.7 years ago by naive • 0

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SAM samtools pairwisealignment alignment blastn

6.2 years ago ktehmsen • 0

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rsamtools samtools bam bowtie2

6.8 years ago igor ▴ 50

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rsamtools package installation samtools

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by rbronste ▴ 60

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samtools rsamtools

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by rbronste ▴ 60

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diffbind samtools

updated 7.6 years ago by Gord Brown ▴ 670 • written 7.6 years ago by sergio.espeso-gil • 0

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samtools

8.2 years ago • updated 8.1 years ago josh_banta • 0

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gviz GenomeGraphs BAM rsamtools samtools

updated 8.2 years ago by Martin Morgan 25k • written 8.3 years ago by Mehmet Ilyas Cosacak • 0

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bam rsamtools samtools genomicalignments

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by Vang Le ▴ 80

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python samtools

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by malikbashirkhan2 • 0

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samtools bioinformatics

9.5 years ago • updated 9.4 years ago engr.yahya602 • 0

12 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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Popular Question to Guido Hooiveld ★ 4.1k