Bioconductor Samr

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samr

updated 7.9 years ago by daniel.vantwisk ▴ 50 • written 7.9 years ago by tommykeves • 0

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samr

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by Linda Chaba ▴ 10

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samr

9.6 years ago SamGG ▴ 360

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samr

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by yuan.qing ▴ 10

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samr SAM siggenes bioconductor differential gene expression

10.2 years ago svlachavas ▴ 840

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samr rnaseq CRAN

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by aristotele_m ▴ 40

6 results • Page 1 of 1

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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