Bioconductor Samples

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samples sampleNumbers DESeq2

written 2.6 years ago by Lidia • 0

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samples rlog DESeq2

updated 3.0 years ago by Michael Love 42k • written 3.0 years ago by rafaelsolersanblas ▴ 50

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R deseq2 Paired Samples

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by m.wekking • 0

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edger normalization samples comparisons

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by roser.navarro • 0

4 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by nramakr • 0

Thank you. Could you clarify what that says about the validity of the whole dataset? Would it still be alright to assess candidates above t…

Answer: Volcano plot has many values around zero by ATpoint ★ 4.5k

It means you have little (no) evidence for any differential expression.

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k