Bioconductor Samples

Showing : samples • reset

0

votes

3

replies

723

views

samples sampleNumbers DESeq2

written 2.6 years ago by Lidia • 0

6

votes

4

replies

1.9k

views

samples rlog DESeq2

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by rafaelsolersanblas ▴ 50

0

votes

1

reply

748

views

R deseq2 Paired Samples

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by m.wekking • 0

2

votes

1

reply

1.0k

views

edger normalization samples comparisons

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by roser.navarro • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Votes

Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Awards • All

Scholar to James W. MacDonald 67k