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Student
samples
sampleNumbers
DESeq2
written 2.7 years ago by
Lidia
• 0
6
votes
4
replies
1.9k
views
Which rlog should I use for DESeq2 analysis
samples
rlog
DESeq2
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
rafaelsolersanblas
▴ 50
0
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1
reply
762
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Paired samples in DESeq2
R
deseq2
Paired
Samples
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
m.wekking
• 0
2
votes
1
reply
1.0k
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edgeR normalisation which samples to include
edger
normalization
samples
comparisons
updated 7.3 years ago by
Gordon Smyth
52k • written 7.3 years ago by
roser.navarro
• 0
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Comment: MBDseq analysis using qsea package
by
Lukas
▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts
by
sindhuri
• 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: Paired analysis in proteomics data for DE while interested in only a particular
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Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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