Bioconductor Sample

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metadata grangeslist granges sample

updated 7.9 years ago by Michael Lawrence ★ 11k • written 7.9 years ago by Sim1pall8a • 0

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bioconductor flowcore sample

updated 8.8 years ago by Jiang, Mike ★ 1.3k • written 8.8 years ago by cherryzt • 0

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1.4k

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DNAStringSet sample

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by vinod.acear ▴ 50

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1.4k

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granges R sample

updated 9.4 years ago by Julian Gehring ★ 1.3k • written 9.4 years ago by Dimitris Polychronopoulos ▴ 80

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1.1k

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qpcr sample

9.6 years ago Frederico Moraes Ferreira ▴ 100

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annotation variantannotation sample

9.9 years ago by0 • 0

6 results • Page 1 of 1

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Answer: DNAStringSet(x, start=, end=) loses quality information by stenlana035 • 0

Perhaps the hub genes are associated with other variables that have a negative correlation with the immune score rather than the immunologi…

Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Votes

Limma outputs different results for same sample?

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

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