Showing : sage • reset
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2
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edgeR case-study, SAGE profiles of tumor tissue - where to find data sets?
SAGE edgeR SAGE edgeR
10.7 years ago Gordon Smyth 52k
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1
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971
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edgeR- data for case studies
SAGE PROcess edgeR SAGE PROcess edgeR
updated 12.5 years ago by ▴ 140 • written 12.5 years ago by 52k
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3
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1.4k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 12.6 years ago by 25k • written 12.6 years ago by 52k
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1.3k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
12.6 years ago alessandro.guffanti@genomnia.com ▴ 330
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921
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2012 Systems Bioinformatics Workshop
SAGE Visualization Network SAGE Visualization Network
12.6 years ago Christopher Bare ▴ 10
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3
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1.4k
views
edgeR: effect of 'outlier' tags on differential expression calls
SAGE edgeR SAGE edgeR
updated 12.8 years ago by 52k • written 12.8 years ago by ▴ 330
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2
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1.2k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE edgeR SAGE edgeR
updated 12.9 years ago by 52k • written 12.9 years ago by ▴ 330
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2
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1.1k
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next-generation sequencing and embryogenisis
Sequencing SAGE Coverage Sequencing SAGE Coverage
updated 14.6 years ago by ▴ 330 • written 14.6 years ago by ▴ 20
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1.3k
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P>1 (edgeR and sage.test)
SAGE qvalue SAGE qvalue
14.6 years ago Naomi Altman ★ 6.0k
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950
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BioC 2010 Conference Update
Sequencing SAGE Genetics Sequencing SAGE Genetics
14.7 years ago Martin Morgan 25k
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10
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2.4k
views
Statistics for next-generation sequencing transcriptomics
Sequencing SAGE Sequencing SAGE
updated 15.6 years ago by ▴ 10 • written 15.6 years ago by ★ 3.4k
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2
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1.2k
views
Fwd: edgeR with only 1 replicate?
Sequencing SAGE edgeR Sequencing SAGE edgeR
updated 15.6 years ago by ★ 6.0k • written 15.6 years ago by ★ 2.0k
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5
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1.4k
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edgeR and sagenhaft
SAGE GO edgeR SAGE GO edgeR
16.0 years ago Naomi Altman ★ 6.0k
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0
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742
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Fwd: Re: edgeR and sagenhaft
SAGE GO edgeR SAGE GO edgeR
16.0 years ago Naomi Altman ★ 6.0k
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1
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1.5k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
17.4 years ago Hervé Pagès 16k
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8
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1.7k
views
[SAGEnhaft] This library does all post analysis on SAGE or is need another software for to do?
SAGE sagenhaft SAGE sagenhaft
updated 18.4 years ago by ▴ 220 • written 18.4 years ago by ▴ 770
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1
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1.9k
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Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 100
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0
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1.4k
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S+ArrayAnalyzer and BioConductor Announcement
Microarray SAGE Annotation Infrastructure Microarray SAGE Annotation Infrastructure
20.7 years ago MOConnell@insightful.com ▴ 20
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0
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1.4k
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Bioconductor 1.2 Released
Microarray SAGE Normalization GO GUI Cancer cdf affy vsn graph AnnBuilder Microarray
21.7 years ago Jeff Gentry ★ 3.9k
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1.4k
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Reminder: Release 1.2 on May 28th
Microarray SAGE Normalization GO GUI vsn graph AnnBuilder Microarray SAGE Normalization
21.7 years ago Jeff Gentry ★ 3.9k
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5
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1.3k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
22.0 years ago madman@jimmy.harvard.edu ▴ 850
21 results • Page 1 of 1
Recent ...
Replies
Comment: GSVA on RNAseq data by Bob ▴ 10
Hi Robert, We were actually very interested in this problem in particular. It seems that using counts for gene sets with varying gene leng…
Comment: plyranges: find exact GRanges match keeping metadata columns by Michael Love 43k
But I will say if you are doing a lot of these, and require exact match, just making it a simple key -- eg `paste0(start,".",end)` -- seems…
Answer: Comparing Mock vs Infected in WT and Knockout Cells by Michael Love 43k
I recommend for questions about statistical analysis plan to meet with a local statistician or someone familiar with linear models in R. I …
Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi by ATpoint ★ 4.6k
WGCNA is no Bioconductor package. Consider biostars.org or bioinformatics Reddit, but if you do show a bit more effort please. People appre…
Answer: Error: lexical error: invalid char in json text (alevin-seurat) by ATpoint ★ 4.6k
Two things: 1) See https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#Alevin -- Your `colon_file`…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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