Bioconductor Rsqlite

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RSQLite org.Hs.eg.db

3.5 years ago chenghaomai • 0

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RSQLite lumi

4.3 years ago Rohmatul • 0

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jaspar rsqlite

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by m.d.shapiro • 0

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R RSQLite

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by biostR ▴ 10

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reactome.db rsqlite

updated 8.1 years ago by willem.ligtenberg ▴ 150 • written 8.1 years ago by Lluís Revilla Sancho ▴ 760

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rsqlite

8.1 years ago ngrundmann • 0

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rsqlite bioconductor bioclite rcpp.h

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by conkline • 0

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oligo rsqlite pd.hta.2.0

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by Vincent J. Carey, Jr. 6.7k

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org.hs.eg.db DBI rsqlite

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by Gordon Smyth 52k

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annotation annotationdbi rsqlite

10.0 years ago Ceca Bojic ▴ 10

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biocinstaller genomicfeatures rsqlite

updated 10.3 years ago by Dan Tenenbaum ★ 8.2k • written 10.3 years ago by vimartin • 0

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VariantAnnotation RSQLite

10.3 years ago remi.tournebize ▴ 10

12 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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