Bioconductor Rory stark

Showing : rory stark • reset

votes

replies

2.3k

views

CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 2.3 years ago by arisarkar88 ▴ 40 • written 4.6 years ago by bioinfouser2 ▴ 10

vote

replies

1.7k

views

diffbind rory stark chip seq

updated 4.1 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by bioinfouser2 ▴ 10

vote

replies

1.1k

views

diffbind Rory Stark coordinate

updated 4.7 years ago by Rory Stark ★ 5.2k • written 4.8 years ago by Guandong Shang ▴ 40

votes

replies

2.3k

views

diffbind rory stark

7.3 years ago andrew.gehrke • 0

votes

replies

1.3k

views

rory stark

7.9 years ago • updated 7.5 years ago mforoo1 • 0

vote

replies

3.0k

views

diffbind chipseq atac-seq rory stark

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by andrew.gehrke • 0

votes

2.2k

views

Rory Stark diffbind TMM edgeR chipseq

updated 8.4 years ago by Rory Stark ★ 5.2k • written 8.6 years ago by akdess • 0

7 results • Page 1 of 1

Recent ...

Replies

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k