Bioconductor Rnaseqdtu

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881

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rnaseqDTU DRIMSeq

2.4 years ago wangziwei0010 ▴ 10

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1.5k

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rnaseqDTU

2.7 years ago • updated 2.5 years ago ksong ▴ 10

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1.6k

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DEXSeq rnaseqDTU

3.3 years ago • updated 3.2 years ago rbenel ▴ 40

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1.5k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

3.3 years ago bioinformatic_trainee ▴ 10

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728

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rnaseqDTU

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by rohitsatyam102 ▴ 20

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835

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by debatosh das ▴ 10

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836

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rnaseqDTU

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by dixit.anirudha • 0

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982

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rnaseqDTU

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by nicog • 0

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1.6k

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rnaseqdtu

5.4 years ago rbenel ▴ 40

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.6 years ago by Michael Love 43k • written 5.9 years ago by fiona.dick91 ▴ 60

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1.8k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.6 years ago saddamhusain77 • 0

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3.7k

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tximport dtu salmon TPM rnaseqDTU

written 5.7 years ago by fiona.dick91 ▴ 60

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.5k

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rnaseqdtu

5.8 years ago rbenel ▴ 40

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2.6k

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rnaseqDTU dtu

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by rbenel ▴ 40

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1.3k

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DTU DRIMSeq rnaseqDTU

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by fiona.dick91 ▴ 60

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1.3k

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drimseq rnaseqdtu stager

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by rbenel ▴ 40

18 results • Page 1 of 1

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Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…

Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0

In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …

Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Votes

Comment: ANOVA like approach of edgeR

Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

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