Bioconductor Rnaseqcomp

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rnaseqcomp

updated 13 months ago by Gordon Smyth 52k • written 13 months ago by kay2023 • 0

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RNASeqData rnaseqcomp RNASeq

updated 17 months ago by ATpoint ★ 4.7k • written 17 months ago by jg0428 • 0

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.0 years ago Bogdan ▴ 670

3 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

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Answer: normalizatino of dna methylation EPIC data

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