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rnaseq_analysis
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limma - Multi-level Experiments - time course data
limma
limma voom
rnaseq_analysis
DEG
6.3 years ago • updated 5.3 years ago
SPbeginner
• 0
1
vote
3
replies
1.3k
views
Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
rnaseq_analysis
KEGG
nonmodel species
updated 5.8 years ago by
James W. MacDonald
66k • written 5.8 years ago by
laural710
• 0
0
votes
0
replies
951
views
Sequence composition effect
sequencing
rnaseq_analysis
6.5 years ago
alemutak
• 0
1
vote
3
replies
1.4k
views
RNASeq data analysis with bio replicates
rnaseq_analysis
7.1 years ago
fakhter1
• 0
1
vote
1
reply
1.1k
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How to simulate count data to test rnaseq analysis code?
rnaseq_analysis
updated 7.8 years ago by
Gordon Smyth
51k • written 7.8 years ago by
kjo
▴ 70
4
votes
3
replies
4.5k
views
How to do a confounding variable adjustment without using the treatment information?
deseq2
rnaseq_analysis
variancestabilizingtransformation
confounders
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
ompandey
▴ 10
1
vote
2
replies
1.8k
views
Limma model fitting: including and excluding replicates in the model gives different results in RNAseq Analysis
limma
RNAseq_Analysis
model.matrix
updated 9.1 years ago by
Aaron Lun
★ 28k • written 9.1 years ago by
anver
• 0
7 results • Page
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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