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rnaseqDTU
•
reset
2
votes
2
replies
870
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
2.3 years ago
wangziwei0010
▴ 10
1
vote
5
replies
1.5k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
2.6 years ago • updated 2.5 years ago
ksong
▴ 10
2
votes
7
replies
1.6k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
3.2 years ago
rbenel
▴ 40
0
votes
5
replies
1.5k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
3.2 years ago
bioinformatic_trainee
▴ 10
0
votes
1
reply
714
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
825
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
debatosh das
▴ 10
0
votes
2
replies
828
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
dixit.anirudha
• 0
2
votes
2
replies
970
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
nicog
• 0
1
vote
3
replies
1.6k
views
Visualization for DE transcripts
rnaseqdtu
5.4 years ago • updated 5.3 years ago
rbenel
▴ 40
1
vote
1
reply
1.5k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.5 years ago by
Michael Love
42k • written 5.8 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.8k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.6 years ago
saddamhusain77
• 0
16
votes
25
replies
3.6k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.6 years ago by
fiona.dick91
▴ 60
2
votes
4
replies
1.9k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.8 years ago
d-joester
▴ 20
2
votes
8
replies
1.5k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.8 years ago
rbenel
▴ 40
3
votes
9
replies
2.5k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
rbenel
▴ 40
2
votes
2
replies
1.3k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
1.2k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.8k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 6.0 years ago by
Michael Love
42k • written 6.1 years ago by
rbenel
▴ 40
18 results • Page
1 of 1
Recent ...
Replies
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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