Bioconductor RnaseqDTU

Showing : rnaseqDTU • reset

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387

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fishpond DESeq2 rnaseqDTU

updated 7 weeks ago by Michael Love 43k • written 7 weeks ago by muhammadsohailraza • 0

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966

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rnaseqDTU DRIMSeq

2.7 years ago wangziwei0010 ▴ 10

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1.6k

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rnaseqDTU

2.9 years ago • updated 2.8 years ago ksong ▴ 10

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1.7k

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DEXSeq rnaseqDTU

3.5 years ago rbenel ▴ 40

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1.6k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

3.6 years ago bioinformatic_trainee ▴ 10

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787

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rnaseqDTU

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by rohitsatyam102 ▴ 20

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902

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by debatosh das ▴ 10

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888

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rnaseqDTU

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by dixit.anirudha • 0

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1.1k

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rnaseqDTU

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by nicog • 0

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1.9k

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rnaseqdtu

5.7 years ago rbenel ▴ 40

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.9 years ago by Michael Love 43k • written 6.1 years ago by fiona.dick91 ▴ 60

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1.9k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.9 years ago saddamhusain77 • 0

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4.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.9 years ago by fiona.dick91 ▴ 60

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2.0k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.1 years ago d-joester ▴ 20

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1.6k

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rnaseqdtu

6.1 years ago rbenel ▴ 40

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2.8k

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rnaseqDTU dtu

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by rbenel ▴ 40

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1.4k

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DTU DRIMSeq rnaseqDTU

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by fiona.dick91 ▴ 60

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1.3k

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drimseq rnaseqdtu stager

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Jack.Hearn • 0

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1.9k

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DEXSeq StageR rnaseqDTU

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by rbenel ▴ 40

19 results • Page 1 of 1

Recent ...

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k