Bioconductor Rle

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RLE normalization deseq2

updated 2.1 years ago by ATpoint ★ 4.8k • written 2.1 years ago by SH ▴ 10

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S4 Rcpp InteractionSet IRanges Rle

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by lklei001 • 0

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deseq2 RLE

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by f_pardow • 0

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variantannotation VRanges R Rle

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iranges s4vectors rle rlelist

6.8 years ago endrebak85 ▴ 40

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rle deseq2 normalization

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Rle Big data coverageByTranscript

7.0 years ago hauken_heyken ▴ 80

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delayedarray rlelist rle

updated 7.5 years ago by Peter Hickey ▴ 750 • written 7.5 years ago by davide risso ▴ 980

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DataFrame Rle generic expression table

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Rle granges iranges

8.6 years ago my4 ▴ 10

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granges Rle coverage View mean

updated 8.8 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by Christian Ruckert ▴ 170

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biostrings coverage rle iranges

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rle normalization table

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by aiko • 0

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RLE GenomicFeatures rnaseq

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RLE iranges granges coverage

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by gen ▴ 30

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rle list irange grangeslist

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rle Views

10.2 years ago Sean Davis 21k

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views iranges rle

10.2 years ago Janet Young ▴ 740

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affyPLM RLE NUSE

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Rle boxplot

10.3 years ago Johannes Rainer ★ 2.1k

20 results • Page 1 of 1

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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

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DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

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Popular Question to Dario Strbenac ★ 1.6k