Bioconductor Rle

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RLE normalization deseq2

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by SH ▴ 10

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1.1k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by lklei001 • 0

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deseq2 RLE

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by f_pardow • 0

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variantannotation VRanges R Rle

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by Jayendra Shinde • 0

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1.1k

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iranges s4vectors rle rlelist

6.4 years ago endrebak85 ▴ 40

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rle deseq2 normalization

updated 6.4 years ago by Michael Love 42k • written 6.5 years ago by Aurora ▴ 20

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1.3k

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Rle Big data coverageByTranscript

6.6 years ago • updated 6.5 years ago hauken_heyken ▴ 80

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1.8k

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delayedarray rlelist rle

updated 7.0 years ago by Peter Hickey ▴ 740 • written 7.0 years ago by davide risso ▴ 980

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1.6k

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DataFrame Rle generic expression table

updated 16 months ago by Hervé Pagès 16k • written 7.4 years ago by Charles Plessy ▴ 180

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1.8k

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Rle granges iranges

8.1 years ago my4 ▴ 10

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1.8k

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granges Rle coverage View mean

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by Christian Ruckert ▴ 170

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biostrings coverage rle iranges

8.4 years ago likeeatingpizza ▴ 10

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1.5k

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rle normalization table

updated 9.1 years ago by Steve Lianoglou ★ 13k • written 9.1 years ago by aiko • 0

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2.2k

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RLE GenomicFeatures rnaseq

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by gen ▴ 30

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2.9k

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RLE iranges granges coverage

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by gen ▴ 30

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2.1k

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rle list irange grangeslist

updated 9.6 years ago by Chris Seidel ▴ 80 • written 9.6 years ago by gen ▴ 30

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rle Views

9.7 years ago Sean Davis 21k

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1.6k

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views iranges rle

9.7 years ago Janet Young ▴ 740

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affyPLM RLE NUSE

updated 9.8 years ago by Sean Davis 21k • written 9.8 years ago by beverly893 ▴ 10

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1.3k

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Rle boxplot

9.8 years ago Johannes Rainer ★ 2.1k

20 results • Page 1 of 1

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

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