Bioconductor Rforproteomics

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548

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ProteomicsWorkflow PSMatch Spectra RforProteomics

updated 10 weeks ago by Laurent Gatto 1.6k • written 12 weeks ago by Jane_Huang • 0

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179

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rpx PXDataset RforProteomics

3 months ago Jane_Huang • 0

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962

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 17 months ago by Laurent Gatto 1.6k • written 17 months ago by mmvar • 0

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RforProteomics Proteomics ProteomicsWorkflow

updated 17 months ago by Laurent Gatto 1.6k • written 17 months ago by mmvar • 0

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error RforProteomics Install

updated 4.1 years ago by Mike Smith ★ 6.6k • written 4.1 years ago by Phoebe • 0

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RforProteomics

4.1 years ago yueli7 ▴ 20

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rforproteomics proteomics msnid msnbase

4.7 years ago daniel.magnus.bader ▴ 50

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1.4k

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RforProteomics

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by jb3082 • 0

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msnbase rforproteomics

5.8 years ago fgol ▴ 10

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RforProteomics MSnbase

updated 5.9 years ago by Laurent Gatto 1.6k • written 5.9 years ago by fgol ▴ 10

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prostar proteomics rforproteomics annotationforge

updated 6.6 years ago by Samuel Wieczorek ▴ 10 • written 6.6 years ago by lolli.langan ▴ 20

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DEP missing value imputation proteomics rforproteomics

7.1 years ago • updated 6.9 years ago alex.gos90 ▴ 10

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msnbase duplicate rforproteomics

updated 6.9 years ago by Laurent Gatto 1.6k • written 6.9 years ago by joris.vanhoutven ▴ 10

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Bioc package installation rforproteomics

updated 8.8 years ago by Laurent Gatto 1.6k • written 8.8 years ago by sarahgrogan • 0

14 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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