Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
results
•
reset
1
vote
1
reply
875
views
HISAT2 mapping
hisat2
results
updated 21 months ago by
ATpoint
★ 4.6k • written 21 months ago by
ali
• 0
0
votes
1
reply
3.3k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.2 years ago by
Michael Love
43k • written 2.2 years ago by
Chiara
• 0
1
vote
2
replies
3.4k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.8 years ago
james
• 0
3
votes
6
replies
2.7k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
paula.vaccarello
• 0
2
votes
2
replies
993
views
DESeq results gives all genes
deseq2
design matrix
results
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
evocanres
• 0
0
votes
1
reply
1.1k
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
batmaiden
• 0
0
votes
3
replies
1.2k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
jan.soderman
• 0
1
vote
3
replies
1.3k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
A
▴ 40
0
votes
0
replies
903
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.7 years ago
414457044
• 0
0
votes
5
replies
1.4k
views
results {DESeq2} parameters
deseq2
results
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
Aurora
▴ 20
2
votes
5
replies
1.8k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 7.1 years ago by
Michael Love
43k • written 7.7 years ago by
tarun2
• 0
2
votes
4
replies
1.6k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 7.1 years ago by
Steve Lianoglou
★ 13k • written 7.1 years ago by
kritikamish99
▴ 10
3
votes
2
replies
4.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
7.2 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.6k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.8k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.8k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
bhgyu
▴ 30
1
vote
6
replies
2.2k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
wariobrega
• 0
4
votes
4
replies
2.1k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
8.6 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
5.1k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.3k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.7k
views
limma multiple rows per gene in output (write.fit)
limma
results
9.6 years ago
Anne
• 0
2
votes
15
replies
3.5k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.7 years ago • updated 9.6 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon!
by
excess.gecko.shso
• 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open!
by
excess.gecko.shso
• 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
Awards
• All
Teacher
to
dsull
▴ 40
Popular Question
to
bpshtiwan
▴ 10
Popular Question
to
Ali Barry
▴ 40
Popular Question
to
gabriel.hoffman
▴ 170
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
37 minutes ago
Japan,
48 minutes ago
Canada,
1 hour ago
UPF, Barcelona, Spain,
4 hours ago
The city by the bay,
4 hours ago
Traffic: 401 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6