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HISAT2 mapping
hisat2
results
updated 2.1 years ago by
ATpoint
★ 4.8k • written 2.1 years ago by
ali
• 0
0
votes
1
reply
3.9k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.5 years ago by
Michael Love
43k • written 2.5 years ago by
Chiara
• 0
1
vote
2
replies
3.6k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
4.2 years ago
james
• 0
3
votes
6
replies
3.0k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
paula.vaccarello
• 0
2
votes
2
replies
1.1k
views
DESeq results gives all genes
deseq2
design matrix
results
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
evocanres
• 0
0
votes
1
reply
1.1k
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
batmaiden
• 0
0
votes
3
replies
1.3k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
jan.soderman
• 0
1
vote
3
replies
1.4k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
A
▴ 60
0
votes
0
replies
973
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
7.1 years ago
414457044
• 0
0
votes
5
replies
1.6k
views
results {DESeq2} parameters
deseq2
results
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Aurora
▴ 20
2
votes
5
replies
1.9k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 7.4 years ago by
Michael Love
43k • written 8.0 years ago by
tarun2
• 0
2
votes
4
replies
1.7k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 7.5 years ago by
Steve Lianoglou
★ 13k • written 7.5 years ago by
kritikamish99
▴ 10
3
votes
2
replies
4.3k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
7.5 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.8k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
6.1k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
courtney.stairs
• 0
2
votes
5
replies
4.3k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
bhgyu
▴ 30
1
vote
6
replies
2.3k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 8.1 years ago by
Michael Love
43k • written 8.1 years ago by
wariobrega
• 0
4
votes
4
replies
2.2k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
8.9 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
5.3k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.4k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 9.8 years ago by
Michael Love
43k • written 9.8 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.8k
views
limma multiple rows per gene in output (write.fit)
limma
results
9.9 years ago
Anne
• 0
2
votes
15
replies
3.8k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
10.0 years ago • updated 9.9 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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