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HISAT2 mapping
hisat2
results
updated 20 months ago by
ATpoint
★ 4.5k • written 20 months ago by
ali
• 0
0
votes
1
reply
3.1k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.1 years ago by
Michael Love
43k • written 2.1 years ago by
Chiara
• 0
1
vote
2
replies
3.3k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.7 years ago
james
• 0
3
votes
6
replies
2.7k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
paula.vaccarello
• 0
2
votes
2
replies
976
views
DESeq results gives all genes
deseq2
design matrix
results
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
evocanres
• 0
0
votes
1
reply
1.0k
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
batmaiden
• 0
0
votes
3
replies
1.2k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
jan.soderman
• 0
1
vote
3
replies
1.3k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
A
▴ 40
0
votes
0
replies
888
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.6 years ago
414457044
• 0
0
votes
5
replies
1.4k
views
results {DESeq2} parameters
deseq2
results
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
Aurora
▴ 20
2
votes
5
replies
1.7k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 7.0 years ago by
Michael Love
43k • written 7.6 years ago by
tarun2
• 0
2
votes
4
replies
1.5k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 7.0 years ago by
Steve Lianoglou
★ 13k • written 7.0 years ago by
kritikamish99
▴ 10
3
votes
2
replies
3.9k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
7.1 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.6k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.7k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.7k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
bhgyu
▴ 30
1
vote
6
replies
2.1k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
wariobrega
• 0
4
votes
4
replies
2.1k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
8.5 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
5.1k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.2k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 9.3 years ago by
Michael Love
43k • written 9.3 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.7k
views
limma multiple rows per gene in output (write.fit)
limma
results
9.5 years ago
Anne
• 0
2
votes
15
replies
3.5k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.6 years ago • updated 9.5 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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