Showing : results • reset
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952
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HISAT2 mapping
hisat2 results
updated 2.0 years ago by ★ 4.8k • written 2.0 years ago by • 0
0
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1
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3.8k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
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2
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3.5k
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error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.1 years ago james • 0
3
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6
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2.9k
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DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2 results DESeqResults
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
2
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2
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1.0k
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DESeq results gives all genes
deseq2 design matrix results
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
0
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1
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1.1k
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Basemean always multiples of 0.5 in deseq2 results
deseq results baseMean
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
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3
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1.3k
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A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
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3
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1.4k
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Results counts post DESeq same raw counts
DESeq2 results
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 60
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0
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960
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[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO() results
7.0 years ago 414457044 • 0
0
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5
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1.6k
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results {DESeq2} parameters
deseq2 results
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 20
2
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5
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1.9k
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DEGs generation parameters and specificities
deseq2 results design and contrast matrix
updated 7.4 years ago by 43k • written 8.0 years ago by • 0
2
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4
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1.7k
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Tac and Bioconductor giving different results
Tac bioconductor results reproducbiltiy
updated 7.4 years ago by ★ 13k • written 7.4 years ago by ▴ 10
3
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2
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4.2k
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results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
7.4 years ago hs.lansdell ▴ 20
2
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8
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1.7k
views
Deseq2 result for a variable
deseq2 differential expression results
updated 7.5 years ago by 43k • written 7.5 years ago by ▴ 10
2
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5
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6.0k
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DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2 results contrast padj
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
2
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5
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4.2k
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Limma toptable interpretation check
limma microarray fdr p-value results
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 30
1
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6
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2.3k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster multiple time points deseq2 results development
updated 8.1 years ago by 43k • written 8.1 years ago by • 0
4
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4
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2.2k
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Deseq2 results interpretation
deseq2 multiple factor design results
8.9 years ago koeniger ▴ 10
5
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6
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18k
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Group comparison in DESeq2
deseq2 results
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 20
6
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2
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5.2k
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All same padj of contrast results in the DESeq2
deseq2 padj contrast results
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 20
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3
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2.3k
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Getting different results with DESeq2
deseq2 results rstudio
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 10
5
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4
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3.8k
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limma multiple rows per gene in output (write.fit)
limma results
9.8 years ago Anne • 0
2
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15
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3.7k
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BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.0 years ago • updated 9.9 years ago mnaymik ▴ 10
23 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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