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Job: Group Leader (Faculty) positions at EMBL-EBI, Cambridge UK
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10 months ago Wolfgang Huber ★ 13k
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
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2.8 years ago Andy Lynch ▴ 120
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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3.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
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3.6 years ago simonsF.careers • 0
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Job: Bioinformatics Analyst I-II, Prostate Cancer Program - Fred Hutch (Seattle, WA)
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5.6 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Bioinformatics Scientist at NEXUS Personalized Health Technologies in Zurich
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8.7 years ago Daniel Stekhoven ▴ 10
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
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Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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