Showing : reproducibility • reset
3
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Does a specific bioconductor version constrain versions of non-bioconductor packages?
reproducibility versions installing base-r
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by ▴ 40
0
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0
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915
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Which tools should we use to make research reproducible?
bioconductor R reproducibility
8.0 years ago lwumd1400 • 0
3
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2
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1.2k
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DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
deseq2 new version bioconductor software error reproducibility
8.1 years ago Daniel Elsner • 0
0
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16
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2.8k
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Variance between runs of Rsubread
rsubread alignment reproducibility
8.1 years ago Isaac Virshup • 0
1
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2
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1.5k
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Package archive for the purpose of reproducible research
archive reproducibility
updated 8.9 years ago by 25k • written 8.9 years ago by ▴ 10
0
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3
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2.6k
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Locating older version of Bioconductor packages
reproducibility archive source code
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by • 0
2
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4
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2.0k
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no date tag included in docker ps output
docker reproducibility
9.1 years ago anton.kratz ▴ 60
7 results • Page 1 of 1
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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k
Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k
It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k
OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…
Comment: Tximport with RSEM error by Michael Love 42k
Would you post a new issue with example code and maybe what the files look like?
Votes
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
A: GOseq analysis with only upregulated or downregulated genes
A: GOseq analysis with only upregulated or downregulated genes
Answer: Properly constructing a hypergeometric test
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