Bioconductor Replicates

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conditions replicates SmallRNAData DESeq2

updated 15 months ago by Kevin Blighe ★ 4.0k • written 16 months ago by samer ▴ 10

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918

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DESeq2 timecoursedata replicates

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by fepesanz8 • 0

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3.3k

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deseq2 R bioconductor RNA_Seq replicates

updated 5.3 years ago by swbarnes2 ★ 1.4k • written 5.3 years ago by aishu.jp ▴ 30

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2.4k

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rnaseq deseq2 differential expression batch effect replicates

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by Nik dAK ▴ 10

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3.6k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Yonatan Amzaleg • 0

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3.6k

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limma proteomics replicates

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by ivansilbern • 0

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2.8k

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limma duplicatecorrelation replicates

7.9 years ago rwalke13 • 0

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1.8k

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deseq2 replicates

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by le2336 ▴ 20

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5.7k

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DESEQ deseq2 deseq replicates biologicalreplicates

9.3 years ago wd ▴ 30

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1.4k

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rnbeads replicates

updated 9.4 years ago by rnbeads • 0 • written 9.4 years ago by Jon Manning ▴ 40

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1.0k

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replicates

9.6 years ago efratdahan21 • 0

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2.6k

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edgeR rna-seq replicates

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by eb0906 • 0

12 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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