Bioconductor Repeated measures

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deseq2 rnaseq repeated measures time series design formula

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by Dorien ▴ 10

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784

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deseq2 repeated measures

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by jperin • 0

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3.1k

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dream variancePartition limma differential expression repeated measures

updated 5.3 years ago by Gordon Smyth 52k • written 5.3 years ago by hermidalc ▴ 20

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1.8k

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SVA deseq2 repeated measures

updated 5.3 years ago by Robert Castelo ★ 3.4k • written 5.4 years ago by sara.blocquiaux • 0

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2.6k

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limma rna-seq mixed model repeated measures

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by mikhael.manurung ▴ 280

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1.8k

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edgeR rnaseq repeated measures

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by wjh180 • 0

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4.5k

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deseq2 repeated measures time course

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by Marion • 0

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5.5k

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LIMMA FACTORIAL REPEATED MEASURES differential gene expression

9.4 years ago • updated 9.3 years ago robert.maughan • 0

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963

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repeated measures

9.3 years ago PJ • 0

9 results • Page 1 of 1

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Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.0k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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