Bioconductor Repeated measures

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deseq2 rnaseq repeated measures time series design formula

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by Dorien ▴ 10

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722

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deseq2 repeated measures

updated 4.9 years ago by Michael Love 42k • written 4.9 years ago by jperin • 0

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2.9k

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dream variancePartition limma differential expression repeated measures

updated 5.1 years ago by Gordon Smyth 51k • written 5.1 years ago by hermidalc ▴ 20

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1.7k

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SVA deseq2 repeated measures

updated 5.1 years ago by Robert Castelo ★ 3.4k • written 5.1 years ago by sara.blocquiaux • 0

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2.5k

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limma rna-seq mixed model repeated measures

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by mikhael.manurung ▴ 280

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1.7k

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edgeR rnaseq repeated measures

updated 6.6 years ago by Ryan C. Thompson ★ 7.9k • written 6.6 years ago by wjh180 • 0

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4.4k

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deseq2 repeated measures time course

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by Marion • 0

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5.4k

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LIMMA FACTORIAL REPEATED MEASURES differential gene expression

9.2 years ago • updated 9.0 years ago robert.maughan • 0

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936

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repeated measures

9.0 years ago PJ • 0

9 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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