Showing : regioneR • reset
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 7 months ago by • 0 • written 3.5 years ago by ▴ 20
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1
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963
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need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
updated 3.7 years ago by ▴ 150 • written 4.1 years ago by • 0
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1
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713
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behaviour of regioneR permTest function
regioneR
updated 4.8 years ago by ▴ 150 • written 4.8 years ago by • 0
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3
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928
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Replacement error in PermTest
regioneR
5.0 years ago AlejandroMA • 0
1
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1
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676
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regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 5.2 years ago by ▴ 150 • written 5.2 years ago by ▴ 40
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1
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682
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Is localZScore function of regioneR mask-aware?
regioneR
updated 5.2 years ago by ▴ 150 • written 5.2 years ago by ▴ 40
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0
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673
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overlapPermTest will not allow randomizing from MASKED hg19
regioner
6.0 years ago peds09 • 0
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0
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860
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permTest plot Evobs bar moves and it should not
regioner permtest
6.2 years ago linuxborg2 • 0
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5
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2.0k
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permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR permTest
6.3 years ago linuxborg2 • 0
2
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1
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1.2k
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RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 6.6 years ago by ▴ 150 • written 6.6 years ago by ▴ 10
6
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5
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3.2k
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Error running the function permTest
regioner overlappingpeaks
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by ▴ 10
2
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1
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1.2k
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Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 40
1
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1
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1.2k
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Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle regioner seqinr
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 80
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1
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1.3k
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regioneR: error when verbose=TRUE
regioneR
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by • 0
2
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5
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1.4k
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Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 140
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1
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993
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width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges regioneR width
updated 8.4 years ago by ▴ 150 • written 8.4 years ago by ▴ 40
6
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1
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1.9k
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Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR GRanges GCcontent
updated 8.6 years ago by ▴ 150 • written 8.6 years ago by ▴ 80
17 results • Page 1 of 1
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Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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Germany, 1 minute ago
Novartis Institutes for BioMedical Research, 2 minutes ago
Wageningen University, Wageningen, the Netherlands, 5 minutes ago
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