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deseq2 LRT rnaseq design reduced model

updated 5.9 years ago by evocanres • 0 • written 7.5 years ago by I.Castanho ▴ 50

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deseq2 LRT reduced model

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by A ▴ 40

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deseq2 multifactorial design reduced model

7.8 years ago laianavarromartin ▴ 20

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

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Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

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