Bioconductor RecountWorkflow

Showing : recountWorkflow • reset

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recount recountWorkflow recount3

updated 20 months ago by Leonardo Collado Torres ★ 1.1k • written 2.1 years ago by Max Bone • 0

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recount recountWorkflow recount3

updated 20 months ago by Leonardo Collado Torres ★ 1.1k • written 2.1 years ago by dml • 0

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recountWorkflow recount3

updated 24 months ago by Leonardo Collado Torres ★ 1.1k • written 2.1 years ago by soever ▴ 20

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recount3 recountWorkflow

updated 3.2 years ago by Leonardo Collado Torres ★ 1.1k • written 3.3 years ago by António Miguel de Jesus Domingues ▴ 510

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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