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Showing :
recount3
•
reset
0
votes
3
replies
600
views
Merging multi-fastq samples in recount3
recount3
written 6 months ago by
Charlotte Capitanchik
• 0
0
votes
4
replies
1.0k
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 7 months ago by
ATpoint
★ 4.7k • written 21 months ago by
seline.natalie
• 0
0
votes
1
reply
614
views
Recount3 error downloading data
recount3
recount
updated 8 months ago by
Leonardo Collado Torres
★ 1.1k • written 12 months ago by
Max Bone
• 0
4
votes
3
replies
750
views
recount3 problem downloading data from source sra
recount3
updated 9 months ago by
Leonardo Collado Torres
★ 1.1k • written 9 months ago by
PABLO ANTONIO
▴ 10
1
vote
1
reply
601
views
Transcript level expression for CCLE
recount3
recount
CCLE
updated 12 months ago by
Leonardo Collado Torres
★ 1.1k • written 12 months ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
2
replies
963
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 15 months ago by
Leonardo Collado Torres
★ 1.1k • written 16 months ago by
tangming2005
▴ 200
0
votes
2
replies
991
views
recount3 monorail pipeline version
recount3
16 months ago • updated 14 months ago
Lorenzo
• 0
0
votes
3
replies
2.1k
views
Recount3 error with default "recount3_url" option
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Cornwell, Adam
▴ 110
0
votes
2
replies
1.1k
views
Recount3 data download problem
recount
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
gamma.jian
▴ 10
2
votes
6
replies
1.8k
views
Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Max Bone
• 0
2
votes
11
replies
2.1k
views
Not able to download recount3 data
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Niveditha
▴ 20
0
votes
2
replies
1.0k
views
Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
dml
• 0
1
vote
3
replies
1.6k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 21 months ago by
ATpoint
★ 4.7k • written 21 months ago by
David
▴ 20
1
vote
3
replies
980
views
Recount3 data correspond to TCGA data
recount3
updated 27 days ago by
Leonardo Collado Torres
★ 1.1k • written 22 months ago by
kevin lee
• 0
2
votes
3
replies
1.2k
views
BigWig files provided by recount3
recount3
updated 23 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
mario.keller.1988
▴ 20
4
votes
6
replies
1.4k
views
recount 3 protect read length metadata
recountWorkflow
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
soever
▴ 20
1
vote
1
reply
1.0k
views
searching study metadata in recount3
recount3
updated 2.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.3 years ago by
andrew.su
▴ 10
0
votes
1
reply
1.0k
views
recount3 transform_counts vs compute_read_counts
recount3
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.5 years ago by
fdelillo
• 0
2
votes
2
replies
2.6k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
2.7 years ago
David
▴ 20
10
votes
11
replies
3.3k
views
Counts from recount3 for DESeq2 analysis
recount3
DESeq2
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.8 years ago by
william.benit
▴ 10
0
votes
2
replies
1.2k
views
Missing sample in recount3 data
recount3
2.9 years ago • updated 2.8 years ago
alex.dietrich
• 0
0
votes
1
reply
1.2k
views
Retrieve the read counts per transcript instead of per gene
recount3
updated 2.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
oligoelemento
▴ 10
11
votes
8
replies
2.6k
views
Error when downloading data with recount3.
recount3
updated 2.9 years ago by
chris.wilks
▴ 70 • written 4.3 years ago by
Zach Brehm
▴ 20
1
vote
1
reply
1.6k
views
recount3 - download bigwig files for TCGA data
recount3
recount
TCGA
updated 2.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
Xuebing
▴ 10
0
votes
1
reply
811
views
Sample tissue annotation
recount3
updated 3.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.1 years ago by
M.M.M.M.
• 0
0
votes
1
reply
1.1k
views
Distinguishing between single cell and bulk data in recount3 study explorer
recount3
updated 3.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
kstachelek
• 0
0
votes
2
replies
2.3k
views
Get read counts for TCGA samples via recount3
recount3
3.3 years ago • updated 3.2 years ago
mario.keller.1988
▴ 20
2
votes
2
replies
1.6k
views
[recount3] Merge gene counts tables from multiple projects (SRP)
recount3
recountWorkflow
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
1
reply
1.1k
views
Different read support for splice junctions using snapcount and recount3
recount3
snapcount
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
mario.keller.1988
▴ 20
2
votes
5
replies
1.7k
views
Downloading count matrix for full recount3 dataset
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.1k • written 3.6 years ago by
Ben
• 0
0
votes
2
replies
1.4k
views
recount3: advice for working with an unannotated genes
recount3
updated 3.2 years ago by
devorah.fialkoff
• 0 • written 3.7 years ago by
MakeTheBrain
• 0
1
vote
1
reply
2.0k
views
Correlation analyses on TCGA data
RNA-seq
Normalization
edgeR
recount3
updated 3.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.7 years ago by
mario.keller.1988
▴ 20
0
votes
1
reply
1.5k
views
Using recount data to calculate Intron retention
snapcount
recount3
recount
updated 3.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.9 years ago by
Mariela Cortés López
• 0
33 results • Page
1 of 1
Recent ...
Replies
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Hello again, Can using inSilicoMerging handle this situation?
Answer: normalizatino of dna methylation EPIC data
by
James W. MacDonald
68k
Your code doesn't show the error? Anyway, the default for `colMeans2` is useNames = TRUE, and the call to `colMeans2` in `preprocessNoob…
Answer: WGCNA
by
James W. MacDonald
68k
This support site is meant to help people with technical questions about using Bioconductor packages, rather than as a place to get analysi…
Answer: EuroBioC2023 abstract submission is open!
by
cirwin009
• 0
Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/ [Block Blast][1] This article offers a thorough and in-depth…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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