Bioconductor Read counting

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read counting CNV rsamtools

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by Bogdan ▴ 670

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1.3k

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featurecounts read counting

updated 6.7 years ago by Gordon Smyth 51k • written 6.8 years ago by marc.gabriel.01 • 0

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diffbind read counting warning message chromatin atac-seq

updated 7.0 years ago by Gord Brown ▴ 670 • written 7.0 years ago by tgjohnst • 0

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2.3k

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Gviz sashimi sashimi plots read counting bam

updated 7.7 years ago by Robert Ivanek ▴ 750 • written 7.7 years ago by bernt.popp • 0

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3.1k

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summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting

8.4 years ago ErickF ▴ 40

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4.2k

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genomicalignments read counting

9.2 years ago kgorczak ▴ 10

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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k

> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…

Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k

I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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