Bioconductor Rcytoscape

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3.8k

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wgcna rcytoscape

updated 8.5 years ago by branislav misovic ▴ 120 • written 8.5 years ago by christopher.clarskon15 ▴ 20

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WGCNA rcytoscape network analysis

updated 8.5 years ago by Paul Shannon ▴ 470 • written 8.6 years ago by christopher.clarskon15 ▴ 20

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rcytoscape r network graphBAM object

updated 9.0 years ago by Dan Tenenbaum ★ 8.2k • written 9.0 years ago by alptaciroglu ▴ 50

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rcytoscape

updated 9.5 years ago by pshannon ▴ 100 • written 9.5 years ago by vmanem ▴ 10

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rcytoscape

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by Robert M. Flight ▴ 280

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software error rcytoscape xml

updated 10.1 years ago by drsuuzzz • 0 • written 10.2 years ago by alessandro brozzi ▴ 120

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SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape

10.9 years ago Paul Shannon ▴ 750

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2.3k

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graph RCytoscape graph RCytoscape

updated 11.0 years ago by Paul Shannon ▴ 470 • written 11.0 years ago by Christopher T Gregg ▴ 210

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1.9k

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Network charm RCytoscape Network charm RCytoscape

12.1 years ago Paul Shannon ▴ 750

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RCytoscape RCytoscape

12.1 years ago Paul Shannon ▴ 750

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RCytoscape RCytoscape

12.7 years ago Eleonora Lusito ▴ 10

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GO GLAD RCytoscape GO GLAD RCytoscape

12.7 years ago Paul Shannon ▴ 750

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1.5k

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SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage

updated 12.7 years ago by Tim Triche ★ 4.2k • written 12.7 years ago by Ekta Jain ▴ 370

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graph RCytoscape graph RCytoscape

12.8 years ago Burak Kutlu ▴ 140

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937

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RCytoscape RCytoscape

13.7 years ago Paul Shannon ★ 1.1k

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graph RCytoscape graph RCytoscape

updated 14.1 years ago by Paul Shannon ★ 1.1k • written 14.1 years ago by Chad Burrus ▴ 20

16 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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