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Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
DESeq2
raw
updated 2.2 years ago by
swbarnes2
★ 1.4k • written 2.2 years ago by
Hicham
▴ 10
0
votes
1
reply
924
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr
raw
Agilent
MicroarrayData
import
updated 3.3 years ago by
Gordon Smyth
52k • written 3.3 years ago by
irina.st.louis4
• 0
3
votes
1
reply
2.6k
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Processing RAW CEL files from GEO
CEL
RAW
geoquery
readaffy
updated 10.3 years ago by
Sean Davis
21k • written 10.3 years ago by
PyPer
▴ 20
3 results • Page
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Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.0k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current rel…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Votes
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
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