Bioconductor Rattus norvegicus

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1.6k

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Gsea rattus norvegicus

updated 6.5 years ago by Gordon Smyth 51k • written 6.5 years ago by Aurora ▴ 20

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826

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rattus norvegicus

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by jambroise83 ▴ 10

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1.5k

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annotation chippeakanno rattus norvegicus medip-seq

8.7 years ago Vang Le ▴ 80

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2.3k

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Alignment Rattus norvegicus BSgenome BSgenome QuasR Alignment Rattus norvegicus BSgenome

updated 10.7 years ago by Hervé Pagès 16k • written 10.7 years ago by Guido Hooiveld ★ 4.1k

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2.1k

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Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO

updated 15.7 years ago by Groot, Philip de ▴ 630 • written 15.7 years ago by Sebastien Gerega ▴ 370

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1.6k

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Rattus norvegicus Rattus norvegicus

updated 16.8 years ago by Straubhaar, Juerg ▴ 300 • written 16.8 years ago by Dario Greco ▴ 310

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1.7k

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Rattus norvegicus Rattus norvegicus

updated 16.9 years ago by Martin Morgan 25k • written 16.9 years ago by Elliot Kleiman ▴ 150

7 results • Page 1 of 1

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k