Showing : rankprod • reset
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Shifted volcano plot after RankProd
rankp RankProd
19 months ago Alessia • 0
1
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3
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How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 5.1 years ago by 67k • written 5.1 years ago by • 0
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971
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RankProd RP function length error
rankprod rp gr2
updated 6.3 years ago by 43k • written 6.3 years ago by • 0
3
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2
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1.3k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 7.4 years ago by 67k • written 7.4 years ago by ▴ 20
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7
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1.8k
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RankProd crashing - stability issues?
rankprod crash
7.5 years ago • updated 7.4 years ago bhgyu ▴ 30
4
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6
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2.6k
views
Bioconductor open source policy
licenses rankprod
updated 7.5 years ago by 67k • written 7.5 years ago by • 0
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1.0k
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Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
7.8 years ago ggyu1215 • 0
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0
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936
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How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
8.4 years ago johnanthonyholtjr • 0
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0
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1.1k
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Regarding the package RankProd
microarray rankprod
8.7 years ago sancharisircar24 • 0
1
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1
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1.1k
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Problem using RankProd
rankprod
updated 9.1 years ago by 67k • written 9.1 years ago by • 0
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0
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1.4k
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RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
9.2 years ago horcsct ▴ 10
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1.2k
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Combine RankProd output Tables (up & down)
RankProd
9.2 years ago horcsct ▴ 10
0
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2.2k
views
Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
9.4 years ago sumedharoy • 0
5
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2
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2.5k
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RankProd: Why are p-values=0?
rankprod p-value
updated 9.4 years ago by 67k • written 9.4 years ago by • 0
0
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0
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1.3k
views
Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
9.6 years ago svlachavas ▴ 840
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Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
10.3 years ago Guest User ★ 13k
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1
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1.6k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 10.6 years ago by ▴ 30 • written 10.6 years ago by 51k
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1
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1.8k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.6 years ago by ▴ 30 • written 10.6 years ago by ▴ 190
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963
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
10.6 years ago Stefanie Busch ▴ 30
0
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3
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2.4k
views
GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 30
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1.4k
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Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
11.3 years ago Guest User ★ 13k
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0
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1.1k
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Comparing human and mouse expression directly with RankProd
RankProd RankProd
11.9 years ago Cornwell, Adam ▴ 110
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0
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1.2k
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RankProd absurd results
qPCR RankProd qPCR RankProd
12.0 years ago Guest User ★ 13k
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0
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1.2k
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RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
12.0 years ago Guest User ★ 13k
0
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0
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1.2k
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RankProd paired-sample analysis
RankProd RankProd
12.3 years ago Maider Muñoz ▴ 20
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1.1k
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RankProd package paired-sample sesign
RankProd RankProd
12.3 years ago Maider Muñoz ▴ 20
0
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1
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1.2k
views
meta-analysis with RankProd
RankProd RankProd
updated 12.8 years ago by ▴ 740 • written 12.8 years ago by ▴ 40
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1
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1.4k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 30
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2
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1.7k
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Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
13.3 years ago boczniak767 ▴ 740
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0
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946
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Gene IDs returned by RankProd topGene command
RankProd RankProd
14.7 years ago Blumenberg, Miroslav ▴ 30
0
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2
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1.6k
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Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 15.0 years ago by ▴ 20 • written 15.0 years ago by ▴ 20
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0
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1.3k
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Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
15.0 years ago Rohan M ▴ 20
0
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1
reply
1.1k
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 10
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4
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1.6k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 15.8 years ago by ▴ 70 • written 15.8 years ago by ▴ 190
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2
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1.6k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 15.8 years ago by 67k • written 15.8 years ago by ▴ 70
0
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0
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1.1k
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Rank Products- breast cancer
Cancer RankProd Cancer RankProd
16.5 years ago Eleni Christodoulou ▴ 150
0
votes
3
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2.0k
views
Error in RankProd package
limma RankProd limma RankProd
updated 17.7 years ago by ▴ 100 • written 17.7 years ago by ▴ 680
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0
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1.1k
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meaning of pfp in RankProd
RankProd RankProd
17.8 years ago Matthew McCormack ▴ 180
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0
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1.1k
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help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
18.0 years ago Kimpel, Mark W ▴ 890
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3
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1.5k
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 19.7 years ago by ▴ 340 • written 19.7 years ago by 51k
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0
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990
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A new package: RankProd
RankProd RankProd
19.7 years ago Fangxin Hong ▴ 810
41 results • Page 1 of 1
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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
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