Showing : rDGIdb • reset
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queryDGIdb lexical error for some genes
lexicalerror rDGIdb DGIdb json
8 months ago Dennis • 0
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6
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779
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rDGIdb package inconsistency with web interface
rDGIdb
12 months ago christopherjamessteel1990 • 0
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674
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rDGIdb package: score of the results
rDGIdb r
21 months ago HELEN • 0
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645
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Timeout error when querying DGIDB
rDGIdb
2.5 years ago Jannah • 0
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610
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DGIdb service not available
rDGIdb
2.9 years ago DannyM • 0
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Is there currently something wrong with the rDGIdb API?
rDGIdb
4.1 years ago mike-zx • 0
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What happends with a package in submission through the old issue tracker?
github package submission rDGIdb issue tracker
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
7 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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