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r3Cseq
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709
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r3cseq error with trimmed sequence as input
r3cseq
bam
trimmed
4.6 years ago
ch_el
▴ 10
0
votes
1
reply
1.1k
views
r3Cseq problems in batch mode
r3Cseq
updated 7.4 years ago by
izzy.yichao.cai
▴ 10 • written 8.7 years ago by
manduchi
▴ 10
0
votes
0
replies
943
views
r3Cseq and rat genome
4Cseq
r3cseq
8.3 years ago
tlgolan
• 0
0
votes
0
replies
1.0k
views
r3cseq error after finishing the work
r3cseq
4c
9.3 years ago
Theo
▴ 10
0
votes
0
replies
910
views
r3Cseq file name convention
r3Cseq
9.6 years ago
felix.klein
▴ 150
5 results • Page
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Comment: WGCNA with TPM tables
by
ATpoint
★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
You are an absolute lifesaver, thank you so much for the clarification!
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Votes
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
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