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qvalue
•
reset
0
votes
3
replies
669
views
qvalue density function error
qvalue
5 months ago
Tim
• 0
0
votes
1
reply
401
views
FDR via q-value
qvalue
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
John
• 0
0
votes
0
replies
917
views
Storey's qvalue and interpreting p-value histogram
qvalue
3.1 years ago
mikhael.manurung
▴ 280
0
votes
0
replies
1.1k
views
installation of package 'qvalue' had non-zero exit status (
qvalue
3.2 years ago
natasha.tilich
• 0
4
votes
6
replies
2.0k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
5.2 years ago
manozawa
▴ 10
1
vote
4
replies
4.6k
views
Issue with qvalue function: Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite values in inputs are not allowed
qvalue
5.5 years ago
anamaria
▴ 10
9
votes
5
replies
5.8k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 6.4 years ago by
Steve Lianoglou
★ 13k • written 6.4 years ago by
Harrisonesmith
• 0
0
votes
1
reply
5.5k
views
Problem installing dartR: package 'qvalue' is not available for R version 3.5.1
qvalue
dartR
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
mumpalsson
• 0
2
votes
3
replies
6.8k
views
Package is not available for R version 3.5.0
qvalue
NBPSeq
updated 6.8 years ago by
Gordon Smyth
52k • written 6.8 years ago by
Gary
▴ 20
6
votes
2
replies
1.6k
views
Anomal pvalue distribution and qvalue calculation
qvalue
pvalue histogram
multiple testing correction
updated 6.8 years ago by
Nikos Ignatiadis
▴ 180 • written 6.8 years ago by
oliver.selmoni
▴ 10
1
vote
7
replies
2.1k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
8.1 years ago • updated 7.2 years ago
joe.d.moore.ii
• 0
1
vote
5
replies
2.1k
views
Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
qvalue
segfault
10.5 years ago • updated 7.2 years ago
Leonardo Collado Torres
★ 1.1k
8
votes
2
replies
6.1k
views
qvalue package throws error when used on any p-values but hedenfalk example
qvalue
updated 7.2 years ago by
Storey, John D.
▴ 100 • written 7.2 years ago by
ilikescience1
▴ 40
1
vote
2
replies
1.5k
views
qvalues lower than pvalues
qvalue
7.8 years ago
AR3513
• 0
0
votes
1
reply
1.9k
views
P-value distribution acceptable for qvalue
qvalue
pvalue histogram
updated 7.8 years ago by
Laurent Gatto
1.6k • written 7.8 years ago by
kerrypop
▴ 30
1
vote
1
reply
3.5k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 8.2 years ago by
Storey, John D.
▴ 100 • written 8.2 years ago by
tombernardryan
▴ 60
1
vote
2
replies
3.3k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
8.4 years ago
tah340
• 0
1
vote
2
replies
5.9k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler
qvalue
updated 8.4 years ago by
Guangchuang Yu
★ 1.2k • written 8.4 years ago by
ZheFrench
▴ 60
69
votes
8
replies
61k
views
conceptual question about FDR, FDR adjusted p-value and q-value
fdr
qvalue
updated 8.5 years ago by
Gordon Smyth
52k • written 12.3 years ago by
Jack Luo
▴ 440
1
vote
2
replies
8.4k
views
Error in dyn.load(file, DLLpath = DLLpath, ...) :
R
qvalue
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Lina
▴ 10
1
vote
2
replies
1.7k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
Sameet Mehta
▴ 30
0
votes
4
replies
2.9k
views
Unable to load qvalue package
qvalue
9.3 years ago
lgvazdela
• 0
4
votes
5
replies
6.9k
views
Unable to use qvalue. Estimated pi0 is <=0
qvalue
usage qvalue
updated 9.4 years ago by
Gordon Smyth
52k • written 9.4 years ago by
robandclara
• 0
2
votes
6
replies
2.0k
views
Problem testing qvalue 2.0.0
qvalue
updated 9.7 years ago by
Storey, John D.
▴ 100 • written 9.7 years ago by
tillea
• 0
2
votes
5
replies
3.8k
views
How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
9.8 years ago
anver
• 0
2
votes
10
replies
3.3k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue
qvalue
updated 10.0 years ago by
Storey, John D.
▴ 100 • written 10.9 years ago by
Giuseppe Gallone
▴ 170
0
votes
1
reply
1.6k
views
loading qvalue library causes R to abort
qvalue
qvalue
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
Guest User
★ 13k
0
votes
7
replies
4.5k
views
Q-values way smaller than P-values! Is that kosher?
qvalue
qvalue
updated 11.2 years ago by
Michael Love
43k • written 11.2 years ago by
Joshua Banta
▴ 30
0
votes
3
replies
2.5k
views
install qvalue
qvalue
qvalue
updated 11.3 years ago by
Martin Morgan
25k • written 11.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
3 empty plots when I use qvalue
qvalue
qvalue
11.7 years ago
Emma Timmins-Schiffman
▴ 10
0
votes
5
replies
1.9k
views
Bioconductor's qvalue package not working on Macs!
qvalue
qvalue
updated 12.5 years ago by
Wolfgang Huber
★ 13k • written 12.6 years ago by
Josh B
▴ 30
0
votes
4
replies
8.5k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing
Organism
qvalue
DESeq
Sequencing
Organism
qvalue
DESeq
updated 13.4 years ago by
Naomi Altman
★ 6.0k • written 13.4 years ago by
Markus Grohme
▴ 20
0
votes
0
replies
1.2k
views
qvalue package:pFDR generation from pvalues
qvalue
qvalue
14.0 years ago
viritha kaza
▴ 580
0
votes
9
replies
4.8k
views
unable to install qvalue..
qvalue
qvalue
updated 14.1 years ago by
Martin Morgan
25k • written 14.1 years ago by
Saurabh Bundela
▴ 30
0
votes
0
replies
1.3k
views
P>1 (edgeR and sage.test)
SAGE
qvalue
SAGE
qvalue
14.8 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
4.2k
views
Running R without X11?
webbioc
qvalue
webbioc
qvalue
updated 16.6 years ago by
ALok
▴ 170 • written 16.6 years ago by
Amy Johnson
▴ 40
0
votes
4
replies
1.7k
views
observations on affyprobeminer
GO
rat2302
cdf
affy
qvalue
GO
rat2302
cdf
affy
qvalue
updated 16.9 years ago by
Hongfang Liu
▴ 10 • written 16.9 years ago by
Mark W Kimpel
▴ 830
0
votes
3
replies
3.6k
views
SAM and qvalue
qvalue
qvalue
updated 18.4 years ago by
Holger Schwender
▴ 900 • written 18.4 years ago by
Nicolas Servant
▴ 260
0
votes
0
replies
1.3k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
18.8 years ago
Pedro López Romero
▴ 360
1
vote
1
reply
1.8k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 19.1 years ago by
James W. MacDonald
68k • written 19.1 years ago by
sabrina.shao
▴ 220
0
votes
0
replies
1.4k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
19.3 years ago
Morten
▴ 300
0
votes
0
replies
1.6k
views
qvalue ( ) ERROR: The estimated pi0 <= 0....
qvalue
qvalue
20.4 years ago
SAURIN
★ 1.1k
0
votes
1
reply
1.2k
views
Limma background subtraction etc
limma
qvalue
limma
qvalue
updated 21.5 years ago by
Gordon Smyth
52k • written 21.5 years ago by
Jason Skelton
▴ 510
43 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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