Bioconductor Quantile

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R quantile list

22 months ago sat • 0

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1.3k

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Quantile noob Normalization minfi minfiDataEPIC

updated 2.4 years ago by James W. MacDonald 67k • written 2.4 years ago by mikat • 0

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1.4k

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microarray quantile expression R Normalization

updated 3.5 years ago by Konstantinos Yeles ▴ 80 • written 3.5 years ago by mohammedtoufiq91 ▴ 10

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CAGEr CAGEset quantile CAGEexp

4.7 years ago mirkocelii ▴ 40

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normalization quantile preprocesscore

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by KVC_bioinfo • 0

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

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Answer: EdgeR Biological CVs

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