Bioconductor Qualitycontrol

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QualityControl methylationArrayAnalysis

2.9 years ago zusman • 0

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QualityControl Alignment QuasR

updated 3.9 years ago by Michael Stadler ▴ 350 • written 3.9 years ago by h.kozlowski • 0

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folder quality QualityControl AffyExpress

4.1 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by n.lu • 0

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qualitycontrol

updated 7.8 years ago by Mike Smith ★ 6.6k • written 7.8 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.9 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.2 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.7 years ago by Stephanie M. Gogarten ▴ 890 • written 8.7 years ago by Lna • 0

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NUSE qualitycontrol microarray

updated 9.0 years ago by Diego Diez ▴ 760 • written 9.0 years ago by jacorvar ▴ 40

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rna-seq GC-Content qualitycontrol

updated 9.2 years ago by Matthew McCormack ▴ 180 • written 9.2 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.0 years ago by Gordon Smyth 52k • written 10.0 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.6 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

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Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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Popular Question to gingergeiger22 • 0