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qualitycontrol
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0
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replies
1.2k
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getsex function error.
QualityControl
methylationArrayAnalysis
3.0 years ago
zusman
• 0
0
votes
1
reply
1.3k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 4.0 years ago by
Michael Stadler
▴ 350 • written 4.0 years ago by
h.kozlowski
• 0
0
votes
0
replies
753
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.1 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.7k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 7.5 years ago by
James W. MacDonald
67k • written 7.5 years ago by
n.lu
• 0
3
votes
2
replies
1.1k
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.9 years ago by
Mike Smith
★ 6.6k • written 7.9 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
8.0 years ago
chelsey.ju
• 0
2
votes
0
replies
1.3k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
8.3 years ago
Bouzid.a
▴ 20
3
votes
14
replies
4.3k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.7 years ago by
Stephanie M. Gogarten
▴ 890 • written 8.7 years ago by
Lna
• 0
2
votes
2
replies
1.7k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 9.1 years ago by
Diego Diez
▴ 760 • written 9.1 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.7k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 9.2 years ago by
Matthew McCormack
▴ 180 • written 9.2 years ago by
NS
▴ 60
1
vote
2
replies
1.9k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 10.1 years ago by
Gordon Smyth
52k • written 10.1 years ago by
alakatos
▴ 130
0
votes
1
reply
1.4k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.7 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
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Replies
Answer: Find exact GRanges match keeping metadata columns
by
Michael Love
43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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Axel Klenk
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shepherl
4.1k
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Gordon Smyth
52k
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bastien_chassagnol
• 0
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Maria Doyle
▴ 100
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