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qualitycontrol
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0
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1.0k
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getsex function error.
QualityControl
methylationArrayAnalysis
2.4 years ago
zusman
• 0
0
votes
1
reply
1.1k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.4 years ago by
Michael Stadler
▴ 350 • written 3.4 years ago by
h.kozlowski
• 0
0
votes
0
replies
637
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.6 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.5k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.9 years ago by
James W. MacDonald
66k • written 6.9 years ago by
n.lu
• 0
3
votes
2
replies
949
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.3 years ago by
Mike Smith
★ 6.5k • written 7.3 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.4 years ago
chelsey.ju
• 0
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.7 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.8k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.2 years ago by
Lna
• 0
2
votes
2
replies
1.5k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.5 years ago by
Diego Diez
▴ 760 • written 8.5 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.5k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.7 years ago by
Matthew McCormack
▴ 180 • written 8.7 years ago by
NS
▴ 60
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.5 years ago by
Gordon Smyth
51k • written 9.5 years ago by
alakatos
▴ 130
0
votes
1
reply
1.3k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.1 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
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Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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