Bioconductor Qualitycontrol

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QualityControl methylationArrayAnalysis

3.1 years ago zusman • 0

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QualityControl Alignment QuasR

updated 4.1 years ago by Michael Stadler ▴ 350 • written 4.1 years ago by h.kozlowski • 0

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780

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folder quality QualityControl AffyExpress

4.2 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by n.lu • 0

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qualitycontrol

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.0 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.4 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.8 years ago by Stephanie M. Gogarten ▴ 890 • written 8.8 years ago by Lna • 0

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1.7k

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NUSE qualitycontrol microarray

updated 9.2 years ago by Diego Diez ▴ 760 • written 9.2 years ago by jacorvar ▴ 40

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rna-seq GC-Content qualitycontrol

updated 9.3 years ago by Matthew McCormack ▴ 180 • written 9.3 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.2 years ago by Gordon Smyth 52k • written 10.2 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.8 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: DepMap data mismatch by Laurent Gatto 1.6k

It might be due to different versions. The repacked/cleaned data in the `depmap` R/Bioconductor package is old, but the latest files can al…

Comment: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k

If you are using `conumee2`, then you are in the wrong place. That isn't a Bioconductor package (yet? No idea if they have/will submit it).

Answer: myvariant error by James W. MacDonald 68k

You don't show anything about the data you are annotating, so it's hard to say what the problem might be. Does the example data work for yo…

Answer: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k

There doesn't appear to be a function called `CNV.summaryplot` in `conumee`. What package does that function come from?

Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

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A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

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