Bioconductor Quality control

Showing : quality control • reset

2

votes

4

replies

3.0k

views

SingleCellExperiment scater sce quality control

updated 4.0 years ago by 1498554536 • 0 • written 4.9 years ago by Linda • 0

0

votes

1

reply

961

views

noiseq RNA-seq quality control

updated 8 months ago by baptiste.bidon • 0 • written 5.4 years ago by Arindam ▴ 80

0

votes

2

replies

1.1k

views

quality control

8.3 years ago christiangriffioen • 0

3 results • Page 1 of 1

Recent ...

Replies

Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: EdgeR Biological CVs

Awards • All