Showing : qpcr • reset
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423
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nondetects and technical replicates
qPCR nondetects
12 months ago Ed Siefker ▴ 230
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0
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777
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
2.1 years ago Javier • 0
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2
replies
1.8k
views
log2FoldChange calculation in DESeq2
DESeq2 RNASeq qPCR qPCRData
3.2 years ago Claire • 0
3
votes
0
replies
648
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects qPCR qPCRData
3.5 years ago jhackett ▴ 30
3
votes
4
replies
3.7k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 3.1 years ago by ▴ 380 • written 3.8 years ago by ▴ 660
0
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1
reply
883
views
Most liked/utilized qPCR analysis package
qPCR
updated 6.5 years ago by 51k • written 6.5 years ago by ▴ 60
0
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0
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942
views
NormqPCR Package query
SelectHK qpcr Genorm
6.6 years ago jingchakvk • 0
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0
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968
views
HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.8 years ago samantha_jeschonek • 0
1
vote
7
replies
1.9k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.7 years ago • updated 6.8 years ago joe.d.moore.ii • 0
1
vote
4
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2.0k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 7.3 years ago by ▴ 120 • written 7.3 years ago by ▴ 60
0
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0
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985
views
Batch Correction in HTqPCR?
qPCR htqpcr
7.8 years ago bradley • 0
1
vote
0
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2.0k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
10.2 years ago • updated 7.9 years ago Gordon Smyth 51k
0
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1.2k
views
Replicating read.qPCR - "attribute on NULL"
qpcr R
8.2 years ago t.f.jones • 0
0
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0
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988
views
select samples for qPCR
qpcr sample
9.2 years ago Frederico Moraes Ferreira ▴ 100
1
vote
3
replies
2.7k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 3.5 years ago by ▴ 60 • written 9.7 years ago by ▴ 40
1
vote
2
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1.8k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.6 years ago by 51k • written 9.6 years ago by ▴ 450
1
vote
1
reply
1.9k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 10.2 years ago by 51k • written 10.3 years ago by ▴ 30
0
votes
5
replies
1.6k
views
dataset dim for siggenes
qPCR limma siggenes
updated 10.2 years ago by 67k • written 10.2 years ago by ▴ 100
0
votes
1
reply
1.3k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 10.3 years ago by 42k • written 10.3 years ago by ★ 13k
0
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0
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1.4k
views
EasyqPCR package - extracting Standard error values
qPCR EasyqpcR qPCR EasyqpcR
10.4 years ago Tommaso Raffaello ▴ 60
1
vote
0
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1.1k
views
HTqPCR package data layout - how flexible is it?
qPCR qPCR
10.5 years ago Guest User ★ 13k
0
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0
replies
4.3k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.6 years ago Dan Tenenbaum ★ 8.2k
0
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2
replies
2.4k
views
First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.7 years ago by 67k • written 10.7 years ago by ▴ 30
0
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2
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1.7k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.7 years ago by ▴ 150 • written 10.7 years ago by ▴ 50
0
votes
5
replies
1.9k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 11.0 years ago by ▴ 600 • written 11.0 years ago by ★ 4.2k
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0
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1.6k
views
ddCt calculation and statistics
qPCR ddCt qPCR ddCt
11.2 years ago Guest User ★ 13k
0
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0
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1.3k
views
test qPCR data for differential expression
qPCR qPCR
11.4 years ago Andreia Fonseca ▴ 810
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17
replies
3.0k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 330
0
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1
reply
4.5k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 330
0
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0
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1.2k
views
workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.7 years ago James Perkins ▴ 120
0
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0
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1.3k
views
workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.7 years ago Guest User ★ 13k
0
votes
2
replies
2.0k
views
reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.8 years ago • updated 11.7 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
replicating ReadqPCR
qPCR qPCR
updated 11.7 years ago by ▴ 300 • written 11.8 years ago by ★ 13k
0
votes
1
reply
2.3k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.8 years ago Matthew Thornton ▴ 380
0
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2
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2.2k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.8 years ago by 67k • written 11.8 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Error Bars on EdgeR
qPCR qPCR
11.8 years ago Ian Sudbery ▴ 30
0
votes
0
replies
1.4k
views
structure of cfx file for HTqPCR
Microarray qPCR cycle HTqPCR Microarray qPCR cycle HTqPCR
11.8 years ago Guest User ★ 13k
0
votes
0
replies
1.7k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray qPCR HTqPCR a4 Microarray qPCR HTqPCR a4
11.8 years ago b1gorsuch@comcast.net ▴ 20
1
vote
1
reply
1.3k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.8 years ago boczniak767 ▴ 740
0
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0
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945
views
Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
11.9 years ago Hans Thompson ▴ 30
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0
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1.2k
views
RankProd absurd results
qPCR RankProd qPCR RankProd
12.0 years ago Guest User ★ 13k
0
votes
0
replies
3.3k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
12.1 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
833
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR qPCR
12.1 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
998
views
sizepower
qPCR GUI qPCR GUI
12.2 years ago Michael Salbaum ▴ 80
0
votes
0
replies
1.7k
views
HTqPCR
qPCR limma ddCt HTqPCR qPCR limma ddCt HTqPCR
12.2 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
1.2k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
12.2 years ago cfischer ▴ 10
0
votes
2
replies
2.4k
views
Fwd: help
qPCR qPCR
updated 12.3 years ago by ★ 2.0k • written 12.3 years ago by ▴ 30
0
votes
0
replies
1.1k
views
HtqPCR-help
qPCR qPCR
12.3 years ago rakesh sharma ▴ 30
0
votes
0
replies
927
views
help
qPCR qPCR
12.3 years ago Guest User ★ 13k
0
votes
0
replies
954
views
help - HTqPCR and lightcycler
qPCR HTqPCR qPCR HTqPCR
12.3 years ago Heidi Dvinge ★ 2.0k
50 results • Page 1 of 1
Recent ...
Replies
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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