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qPCR
•
reset
0
votes
0
replies
493
views
nondetects and technical replicates
qPCR
nondetects
17 months ago
Ed Siefker
▴ 230
0
votes
0
replies
905
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
2.5 years ago
Javier
• 0
0
votes
2
replies
2.0k
views
log2FoldChange calculation in DESeq2
DESeq2
RNASeq
qPCR
qPCRData
3.7 years ago
Claire
• 0
3
votes
0
replies
720
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects
qPCR
qPCRData
3.9 years ago
jhackett
▴ 30
3
votes
4
replies
4.2k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 3.5 years ago by
Ming
▴ 380 • written 4.3 years ago by
enricoferrero
▴ 680
0
votes
1
reply
968
views
Most liked/utilized qPCR analysis package
qPCR
updated 6.9 years ago by
Gordon Smyth
52k • written 6.9 years ago by
rbronste
▴ 60
0
votes
0
replies
1.0k
views
NormqPCR Package query
SelectHK
qpcr
Genorm
7.0 years ago
jingchakvk
• 0
0
votes
0
replies
1.0k
views
HTqPCR trouble with changeCtLayout
htqpcr
qPCR
7.2 years ago
samantha_jeschonek
• 0
1
vote
7
replies
2.1k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
8.2 years ago • updated 7.2 years ago
joe.d.moore.ii
• 0
1
vote
4
replies
2.1k
views
ddCT Package for StepOnePlus qPCR output
qPCR
ddCt
geneexpression
updated 7.8 years ago by
Zhang, Jitao David
▴ 120 • written 7.8 years ago by
rbronste
▴ 60
0
votes
0
replies
1.1k
views
Batch Correction in HTqPCR?
qPCR
htqpcr
8.2 years ago
bradley
• 0
1
vote
0
replies
2.1k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR
Normalization
multtest
limma
siggenes
10.6 years ago • updated 8.3 years ago
Gordon Smyth
52k
0
votes
0
replies
1.3k
views
Replicating read.qPCR - "attribute on NULL"
qpcr
R
8.6 years ago
t.f.jones
• 0
0
votes
0
replies
1.1k
views
select samples for qPCR
qpcr
sample
9.6 years ago
Frederico Moraes Ferreira
▴ 100
1
vote
3
replies
2.8k
views
ddCt calculation using bioconductor package
ddct
qPCR
updated 3.9 years ago by
Pengcheng Yang
▴ 60 • written 10.1 years ago by
gv
▴ 40
1
vote
2
replies
1.9k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR
Sample Maximization Analysis
Experimental Design
qRT-PCR
updated 10.0 years ago by
Gordon Smyth
52k • written 10.0 years ago by
Marcelo Laia
▴ 450
1
vote
1
reply
2.0k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray
qPCR
limma
updated 10.6 years ago by
Gordon Smyth
52k • written 10.7 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
5
replies
1.8k
views
dataset dim for siggenes
qPCR
limma
siggenes
updated 10.6 years ago by
James W. MacDonald
68k • written 10.6 years ago by
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
1.4k
views
deseq2 for pair-wise analysis
qPCR
qPCR
updated 10.7 years ago by
Michael Love
43k • written 10.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
EasyqPCR package - extracting Standard error values
qPCR
EasyqpcR
qPCR
EasyqpcR
10.8 years ago
Tommaso Raffaello
▴ 60
1
vote
0
replies
1.2k
views
HTqPCR package data layout - how flexible is it?
qPCR
qPCR
10.9 years ago
Guest User
★ 13k
0
votes
0
replies
4.4k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
11.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.5k
views
First time use of limma for two-color agilent array analysis
qPCR
limma
GeneSpring
qPCR
limma
GeneSpring
updated 11.2 years ago by
James W. MacDonald
68k • written 11.2 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
2
replies
1.8k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR
qPCR
updated 11.2 years ago by
Kipper Fletez-Brant
▴ 150 • written 11.2 years ago by
Norm Allaire
▴ 50
0
votes
5
replies
2.1k
views
SCAN.UPC for Illumina arrays?
RNASeq
qPCR
affy
oligo
frma
RNASeq
qPCR
affy
oligo
frma
updated 11.5 years ago by
Stephen Piccolo
▴ 600 • written 11.5 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.7k
views
ddCt calculation and statistics
qPCR
ddCt
qPCR
ddCt
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
test qPCR data for differential expression
qPCR
qPCR
11.8 years ago
Andreia Fonseca
▴ 810
0
votes
17
replies
3.3k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing
RNASeq
Microarray
qPCR
Coverage
edgeR
DESeq
Sequencing
RNASeq
Microarray
qPCR
updated 12.0 years ago by
Steve Lianoglou
★ 13k • written 12.0 years ago by
Lucia Peixoto
▴ 330
0
votes
1
reply
4.6k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq
qPCR
edgeR
RNASeq
qPCR
edgeR
updated 12.1 years ago by
Steve Lianoglou
★ 13k • written 12.1 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
1.3k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
12.2 years ago
James Perkins
▴ 120
0
votes
0
replies
1.3k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
12.2 years ago
Guest User
★ 13k
0
votes
2
replies
2.1k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
12.2 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
replicating ReadqPCR
qPCR
qPCR
updated 12.2 years ago by
james perkins
▴ 300 • written 12.2 years ago by
Guest User
★ 13k
0
votes
1
reply
2.4k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray
qPCR
Coverage
Annotation
Pathways
Visualization
Cancer
Breast
Organism
affy
12.2 years ago
Matthew Thornton
▴ 380
0
votes
2
replies
2.2k
views
HTqPCR problem with creation of qPCRset
qPCR
HTqPCR
qPCR
HTqPCR
updated 12.2 years ago by
James W. MacDonald
68k • written 12.2 years ago by
Elisabeth Gilis
▴ 20
0
votes
0
replies
1.2k
views
Error Bars on EdgeR
qPCR
qPCR
12.2 years ago
Ian Sudbery
▴ 30
0
votes
0
replies
1.5k
views
structure of cfx file for HTqPCR
Microarray
qPCR
cycle
HTqPCR
Microarray
qPCR
cycle
HTqPCR
12.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.8k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
12.2 years ago
b1gorsuch@comcast.net
▴ 20
1
vote
1
reply
1.4k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR
ReadqPCR
qPCR
ReadqPCR
12.2 years ago
boczniak767
▴ 740
0
votes
0
replies
1.0k
views
Using different file formats with oligo and analysis packages using oligo
SNP
Microarray
qPCR
cycle
SNP
Microarray
qPCR
cycle
12.3 years ago
Hans Thompson
▴ 30
0
votes
0
replies
1.2k
views
RankProd absurd results
qPCR
RankProd
qPCR
RankProd
12.4 years ago
Guest User
★ 13k
0
votes
0
replies
3.4k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
12.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
894
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR
qPCR
12.6 years ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.1k
views
sizepower
qPCR
GUI
qPCR
GUI
12.6 years ago
Michael Salbaum
▴ 80
0
votes
0
replies
1.8k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.3k
views
HTqPCR problems
Microarray
qPCR
GO
Preprocessing
GLAD
HTqPCR
Microarray
qPCR
GO
Preprocessing
GLAD
12.7 years ago
cfischer
▴ 10
0
votes
2
replies
2.5k
views
Fwd: help
qPCR
qPCR
updated 12.7 years ago by
Heidi Dvinge
★ 2.0k • written 12.7 years ago by
rakesh sharma
▴ 30
0
votes
0
replies
1.2k
views
HtqPCR-help
qPCR
qPCR
12.7 years ago
rakesh sharma
▴ 30
0
votes
0
replies
978
views
help
qPCR
qPCR
12.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.0k
views
help - HTqPCR and lightcycler
qPCR
HTqPCR
qPCR
HTqPCR
12.7 years ago
Heidi Dvinge
★ 2.0k
50 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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