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10.5 years ago • updated 8.2 years ago
Gordon Smyth
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Comment: Use of limma R package with targeted proteomics for DE analysis
by
svlachavas
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Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
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If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
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Jane
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I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
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Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05.
My concerns are about consistency and reproducibili…
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