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ballgown rna-seq q value r

7.6 years ago mkhasin ▴ 20

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scan.upc scan meta q value

9.4 years ago Jo ▴ 30

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Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

Comment: SingleR with multiple single cell references by maltethodberg ▴ 180

Great - the approach with merging the atlases and using `block=` worked well!

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Comment: DESeq - help with pair wise comparisons

Answer: SingleR with multiple single cell references

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