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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 23 months ago by • 0 • written 24 months ago by ▴ 90
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Job: Bioconductor Core developers group opening
R cloud github python git
2.2 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 2.8 years ago by 67k • written 2.8 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by • 0
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3.5 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
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4.6 years ago • updated 4.5 years ago Raito92 ▴ 60
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Load data with rhdf5
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updated 21 months ago by • 0 • written 4.6 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
5.3 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.6 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Scientist II
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5.8 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
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6.3 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
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python bio ngs linux Job
6.7 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.8 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
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7.6 years ago Shamith.Samarajiwa ▴ 180
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.3 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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8.6 years ago • updated 8.3 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.8 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
python samtools
updated 9.1 years ago by 16k • written 9.1 years ago by • 0
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1.6k
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
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9.1 years ago Fiona ▴ 70
3
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seq2pathway error on Mac OS X
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9.2 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
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9.4 years ago careers • 0
23 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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