Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
pwmenrich
•
reset
0
votes
0
replies
803
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
6.3 years ago
intregen
• 0
0
votes
0
replies
941
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.0 years ago
gdeniz
• 0
0
votes
1
reply
1.1k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.1 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
854
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
7.2 years ago
prp291
• 0
0
votes
1
reply
2.3k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 8.6 years ago by
Ou, Jianhong
★ 1.3k • written 8.6 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.2k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
8.7 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.2k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.1 years ago by
Robert Stojnic
▴ 50 • written 9.1 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.5k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.1 years ago
enricoferrero
▴ 680
0
votes
3
replies
1.7k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.4 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.5k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 9.5 years ago by
Robert Stojnic
▴ 50 • written 9.5 years ago by
elliott77
• 0
2
votes
1
reply
1.3k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 9.7 years ago by
Robert Stojnic
▴ 50 • written 9.7 years ago by
enricoferrero
▴ 680
1
vote
3
replies
1.7k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
9.7 years ago
oliwindram
▴ 10
0
votes
5
replies
2.9k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 10.6 years ago by
Robert Stojnic
▴ 80 • written 10.6 years ago by
deepti anand
▴ 50
0
votes
0
replies
931
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.8 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.0k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 11.4 years ago by
Robert Stojnic
▴ 80 • written 11.4 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.4k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 11.6 years ago by
Robert Stojnic
▴ 50 • written 11.6 years ago by
Guest User
★ 13k
16 results • Page
1 of 1
Recent ...
Replies
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Awards
• All
Popular Question
to
Kinnary
▴ 20
Popular Question
to
sergisayolspuig
▴ 80
Popular Question
to
richardallenfriedmanbrooklyn
▴ 30
Scholar
to
Gordon Smyth
52k
Popular Question
to
shepherl
4.1k
Locations
• All
The city by the bay,
46 minutes ago
United States,
1 hour ago
United States,
2 hours ago
Brazil,
2 hours ago
United States,
2 hours ago
Traffic: 1043 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6