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pwmenrich
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666
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.5 years ago
intregen
• 0
0
votes
0
replies
766
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.2 years ago
gdeniz
• 0
0
votes
1
reply
834
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.3 years ago
amanda.joy.price
• 0
0
votes
0
replies
712
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.4 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.8 years ago by
Ou, Jianhong
★ 1.3k • written 7.8 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.0k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.9 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.3 years ago by
Robert Stojnic
▴ 50 • written 8.3 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.3 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.5k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.6 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.6 years ago by
Robert Stojnic
▴ 50 • written 8.6 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.9 years ago by
Robert Stojnic
▴ 50 • written 8.9 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.5k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.9 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.8 years ago by
Robert Stojnic
▴ 80 • written 9.8 years ago by
deepti anand
▴ 50
0
votes
0
replies
816
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.0 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.6 years ago by
Robert Stojnic
▴ 80 • written 10.6 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.8 years ago by
Robert Stojnic
▴ 50 • written 10.8 years ago by
Guest User
★ 13k
16 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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