Bioconductor Pwm

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992

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universalmotif scanning enrich_motifs PWM

2.9 years ago alexandre.blais ▴ 50

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2.0k

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pwm pfm jaspar motifdb

updated 5.9 years ago by Bioconductor Community 0 • written 6.1 years ago by chrisclarkson100 ▴ 50

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934

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pwm motifs jaspar meme motif analysis

6.0 years ago rbronste ▴ 60

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2.6k

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pwm tfbstools jaspar

updated 7.2 years ago by Ge Tan ▴ 20 • written 7.2 years ago by chrisclarkson100 ▴ 50

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1.4k

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biostrings seqlogo pwm

updated 8.1 years ago by Marcel Ramos 700 • written 8.1 years ago by clausdkuhn • 0

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976

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biostrings pwm

8.3 years ago Stefanie Tauber ▴ 40

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1.6k

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motifdb matchpwm motif pwmenrich pwm

9.1 years ago vinod.acear ▴ 50

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

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Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

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