Bioconductor Pwm

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universalmotif scanning enrich_motifs PWM

3.0 years ago alexandre.blais ▴ 50

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2.1k

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pwm pfm jaspar motifdb

updated 6.0 years ago by Bioconductor Community 0 • written 6.1 years ago by chrisclarkson100 ▴ 50

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950

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pwm motifs jaspar meme motif analysis

6.1 years ago rbronste ▴ 60

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2.6k

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pwm tfbstools jaspar

updated 7.3 years ago by Ge Tan ▴ 20 • written 7.3 years ago by chrisclarkson100 ▴ 50

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1.5k

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biostrings seqlogo pwm

updated 8.2 years ago by Marcel Ramos 700 • written 8.2 years ago by clausdkuhn • 0

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989

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biostrings pwm

8.4 years ago Stefanie Tauber ▴ 40

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1.7k

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motifdb matchpwm motif pwmenrich pwm

9.2 years ago vinod.acear ▴ 50

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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