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RNAseq meta-analysis microarray public data sets

updated 6.2 years ago by alexvpickering ▴ 110 • written 6.2 years ago by Vladimir Krasikov ▴ 90

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Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0

Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […

Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k

Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k

Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…

Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k

You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…

Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k

HTqPCR has been fixed and will be re-instated in 3.21

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Scholar to Michael Love 43k