Showing : processamplicons • reset
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Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 2.2 years ago by • 0 • written 7.1 years ago by ★ 1.5k
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ProcessAmplicons using very little memory on big job?
edgeR processamplicons memory problem
6.8 years ago sdalin • 0
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processAmplicons to match sequences 1 or 2 bases shorter than guides?
processamplicons edgeR
updated 6.9 years ago by 4.1k • written 6.9 years ago by • 0
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EdgeR: run processAmplicons without barcodes
EdgeR CRISPR Barcode processamplicons
updated 6.9 years ago by • 0 • written 8.1 years ago by • 0
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using the edgeR for sgRNA workflow with my own data
edger sgrna processamplicons
7.1 years ago Assa Yeroslaviz ★ 1.5k
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Error in processAmplicons "hairpin sequence length not with specified length"
processamplicons
updated 9.0 years ago by ▴ 1000 • written 9.0 years ago by • 0
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Error in processAmplicons "there are duplicate hairpin sequences"
processamplicons
9.0 years ago lucia.caceres • 0
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trying to change length of barcode
processamplicons edger barcode
9.0 years ago lucia.caceres • 0
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edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR processamplicons shrna
updated 9.4 years ago by • 0 • written 9.5 years ago by ▴ 10
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edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 9.9 years ago by ★ 28k • written 9.9 years ago by • 0
10 results • Page 1 of 1
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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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