Bioconductor Probe mapping

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limma avereps probe mapping microarray Agilent

updated 5.8 years ago by Gordon Smyth 51k • written 5.8 years ago by wd ▴ 30

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BSgenome biostrings probe mapping

updated 7.5 years ago by holgerbrandl ▴ 10 • written 8.2 years ago by Dario Strbenac ★ 1.5k

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hta20sttranscriptcluster.db probe mapping annotation pd.hta.2.0 annotationdbi

updated 8.2 years ago by James W. MacDonald 67k • written 8.2 years ago by relathman ▴ 20

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Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

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A: Up/Down Regulated GeneList from edgeR and R

Answer: How do I merge a list of GRanges?

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