Bioconductor Position

Showing : position • reset

0

votes

0

replies

1.2k

views

job position next-generation sequencing package development Job

7.5 years ago Thomas Girke ★ 1.7k

0

votes

3

replies

2.4k

views

vcf variantannotation position

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by 1000G_Q • 0

0

votes

0

replies

2.7k

views

jobs position Job

9.0 years ago gbonte • 0

0

votes

0

replies

1.7k

views

systemsbiology bioinformatics position Job

10.3 years ago Thomas Girke ★ 1.7k

4 results • Page 1 of 1

Recent ...

Replies

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Answer: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Before you try to use a function, you should read the help page to ensure that you are using the correct argument type. As an example, here…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

Votes

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D

Awards • All