Bioconductor Plyr

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MSnbase plyr

updated 4.9 years ago by Laurent Gatto 1.6k • written 4.9 years ago by djshipman2011 ▴ 10

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genomicranges lists plyr

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by nhejazi • 0

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plyr

9.3 years ago b.nota ▴ 370

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Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0

`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …

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scater/scran with TPMs from Salmon - counts?

Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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